Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02360 166 / 1e-48 ATPP2-B10 phloem protein 2-B10 (.1) AT1G56250 152 / 3e-43 ATPP2-B14 phloem protein 2-B14 (.1) AT1G09155 149 / 3e-42 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56240 146 / 5e-41 ATPP2-B13 phloem protein 2-B13 (.1) AT5G24560 144 / 1e-40 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02340 144 / 9e-40 ATPP2-B8 phloem protein 2-B8 (.1) AT2G02250 141 / 8e-39 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02230 140 / 2e-38 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02240 137 / 4e-37 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02310 132 / 1e-35 ATPP2-B6 phloem protein 2-B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007926 [exp] 482 / 3e-172 AT2G02360 192 / 4e-60 phloem protein 2-B10 (.1) Lus10029872 [exp] 155 / 2e-44 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10020674 [exp] 152 / 2e-43 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10008898 [exp] 147 / 2e-41 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10023207 [exp] 145 / 1e-40 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020673 [exp] 145 / 2e-40 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10015208 [exp] 140 / 8e-39 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10029674 [exp] 141 / 9e-39 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10042713 [exp] 140 / 1e-38 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016100 [exp] 157 / 5e-45 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.018G016000 [exp] 154 / 6e-44 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.005G022000 [exp] 153 / 1e-43 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.006G266900 [exp] 149 / 1e-41 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G267000 [exp] 148 / 1e-41 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 147 / 3e-41 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.001G050100 [exp] 142 / 8e-40 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012600 [exp] 137 / 1e-37 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G117600 [exp] 81 / 4e-17 AT3G53000 486 / 2e-175 phloem protein 2-A15 (.1) Potri.015G138600 [exp] 80 / 1e-16 AT5G52120 356 / 3e-124 phloem protein 2-A14 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013463 pacid=23155167 polypeptide=Lus10013463 locus=Lus10013463.g ID=Lus10013463.BGIv1.0 annot-version=v1.0 ATGGAAGGAGGAAATGCCAGTGGAGTACGCCATACGATATTTGACGATCTTCCGGAGGGATGCGTCGTCAAAATCCTGTCGTTCGCCACTCCAGTCGACG CTTGCAGATCGTCATCCGTCTCGTCGTTCTTCAGATCCGCTTCCAGCTCCGATGCCTTGTGGGAGGCATTCCTTCCTTCGGATTACAAGTCCGTGCTCTC GAATTTCGCTGCTGCTCTCCCGCGTTTCTCTTCGAAGAAGGAGCTCTTCCGTATGTTGTGCAACCCGATCATCTACGATCACGACAAGAAGAGTTTTTGG CTGGACAAAATGACTGGCAGCAAGAGTTATATGCTTGCTGCTGAAGGTCTCTCCATCGAGTCAGCTGATAACCCTCAGAATTGGAGTTGGATCAAACACG ATCATTCCAGATTCCCTGAGGTCGCCGAGCTTAGGTTTGTACCTGCTCTCGACATCCGTGGCGAAATTACTACTCCGATGTTATCCCCTGAAGTTACCTA TGCAGCATATCTTGTCTACAAGTTCCATGGAAACGTGTTCGACTGCCTTACGGTGAACACTTCCATAGGTGTTACGGAAGTTGACATTGCTTCCCCCACA GTTTGTCTGACTCCTGACGCGGAACCCTGGCACACACATCGAAACAGCAATGGCCTGCTGAAAACGAGACGTCCAAAGGTCAGGAAAGATGGATGGAGGG AGATCGAGCTCGGGAAGTATCGGAACAAGGATAGCAAGAGTGGCGGGTCGGAGCTGGTTTCCATCCAAGTGAATCGTGGTCAAGAAACCAGGGGTAATCT CATCATTCAAGGAATGGAGCTCAGGCCTACAATAGGAAACCGATCGGGCGAGCCTCTTAAATTTTCCGCAGGACGGTTCCCTGTGCTACGTGAAGCCAAA CATCATCAATGGAGTACTGATAATCCCCCGGAAGTGGTGGAGATAAGACTGGAGCGATTGAGGAGGGAGGCCCTCGTTGGGCAATTCGTGGGGAAACCTC CTGCATCCCCTAAGATCAAAGCAATGGCCAATCGTCTGTGGGGGAGAGAAGGCCGAACCCATGTTAGTAAGATGGAGGATTCGCCGATGTTGCTCTTCGA GTTCCCATCGGAGGCAGTGTGCTCACGGGTGTACGGAGACGGTCGTTCTCGTTCATGGCACTGCGACAACGACTGA
AA sequence Show only first row Show all	>Lus10013463 pacid=23155167 polypeptide=Lus10013463 locus=Lus10013463.g ID=Lus10013463.BGIv1.0 annot-version=v1.0 MEGGNASGVRHTIFDDLPEGCVVKILSFATPVDACRSSSVSSFFRSASSSDALWEAFLPSDYKSVLSNFAAALPRFSSKKELFRMLCNPIIYDHDKKSFW LDKMTGSKSYMLAAEGLSIESADNPQNWSWIKHDHSRFPEVAELRFVPALDIRGEITTPMLSPEVTYAAYLVYKFHGNVFDCLTVNTSIGVTEVDIASPT VCLTPDAEPWHTHRNSNGLLKTRRPKVRKDGWREIELGKYRNKDSKSGGSELVSIQVNRGQETRGNLIIQGMELRPTIGNRSGEPLKFSAGRFPVLREAK HHQWSTDNPPEVVEIRLERLRREALVGQFVGKPPASPKIKAMANRLWGREGRTHVSKMEDSPMLLFEFPSEAVCSRVYGDGRSRSWHCDND

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10013463 [exp]	0	1
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	7.3	0.7776
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	8.5	0.8319
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	11.0	0.8159
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	15.3	0.7948
AT5G61530			small G protein family protein...		Lus10032491 [exp]	22.2	0.8040
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	24.5	0.8012
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	26.6	0.8056
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	28.2	0.8088
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	33.2	0.8075
AT1G52320			unknown protein		Lus10025777 [exp]	34.9	0.7939

Compare expression of checked genes

Lus10013463 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.