Plant FIBer expression Database

Lus10013464 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G23110 175 / 1e-54 unknown protein
AT1G70900 170 / 1e-52 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007928
[exp]
324 / 1e-112 AT1G23110 332 / 1e-115 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G111300
[exp]
210 / 3e-68 AT1G23110 385 / 7e-137 unknown protein
Potri.008G130700
[exp]
193 / 1e-61 AT1G70900 361 / 2e-127 unknown protein
PFAM info
Representative CDS sequence
>Lus10013464 pacid=23155058 polypeptide=Lus10013464 locus=Lus10013464.g ID=Lus10013464.BGIv1.0 annot-version=v1.0
ATGATGAGTCCCACGAACACTAGAAATTCCAGTACAGCTTTGGAATGTGTTCATGGGATTCATGTTATACCACAATCTCCTTTCCCTCTTGAGGTGATTA
CTCAACATGAAGCCTTCCCTCAATCTCACTGTGAAACCTCAACTCAATATGCAGCCAATCAGCCGTCCATGTTCTGGAAATTATGGGAGCAAAGACCAGG
ATGCTTGCGGCCAATCAAGTGTTGCGTTCACGGTGAAAACTTCTCGGAAACAGTTGCGAATGTGTTGACATCGCTTCCGTTTGTTGCTCTGGGTGTGCAG
GCTCCTAGAAAGGATCTGAATACCAAACTGTATGCTAACTCGTTAATCGGGGTTGGAGTCGCATCGAGTTTGTACCATTCATCGAGGGGGAGAGTGAGGA
AGTACTTGAGGTGGCTTGACTATGCAATGATAGCAGCTACAACTGTGGTAATTTCCAATCAAACTAGGCTTTTCGTTTCCAGAAGACTAGGTGGCATTTG
GGAGATTCCCCTTGCCACAACCTCTTTGAGTAGAGCCAGCCAGCCTGTCAGTTTTAGTAATGGTAGTTGTAGCTTATGTATGAATGTATATGATTCTTCA
AAATCCGTCGATATGGCAGCAGGTTCCTTGCTCGAAGAAGCGTACATTTTCGGTGTTCGCCTAAACTGA
AA sequence
>Lus10013464 pacid=23155058 polypeptide=Lus10013464 locus=Lus10013464.g ID=Lus10013464.BGIv1.0 annot-version=v1.0
MMSPTNTRNSSTALECVHGIHVIPQSPFPLEVITQHEAFPQSHCETSTQYAANQPSMFWKLWEQRPGCLRPIKCCVHGENFSETVANVLTSLPFVALGVQ
APRKDLNTKLYANSLIGVGVASSLYHSSRGRVRKYLRWLDYAMIAATTVVISNQTRLFVSRRLGGIWEIPLATTSLSRASQPVSFSNGSCSLCMNVYDSS
KSVDMAAGSLLEEAYIFGVRLN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G23110 unknown protein Lus10013464
[exp]
0 1
AT1G23110 unknown protein Lus10007928
[exp]
1.0 0.9268
AT5G01220 SQD2 sulfoquinovosyldiacylglycerol ... Lus10002499
[exp]
2.0 0.8506
AT5G49600 Protein of unknown function, D... Lus10037804
[exp]
4.2 0.8268
AT2G32260 ATCCT1 phosphorylcholine cytidylyltra... Lus10038368
[exp]
4.9 0.8081
AT5G01220 SQD2 sulfoquinovosyldiacylglycerol ... Lus10004832
[exp]
4.9 0.7976
AT1G68670 GARP myb-like transcription factor ... Lus10035043
[exp]
15.4 0.8065
AT1G79480 Carbohydrate-binding X8 domain... Lus10000278
[exp]
20.1 0.8149
AT5G17400 ER-ANT1 endoplasmic reticulum-adenine ... Lus10034658
[exp]
22.8 0.7848
AT3G02300 Regulator of chromosome conden... Lus10030712
[exp]
24.0 0.7664
AT1G05000 AtPFA-DSP1 plant and fungi atypical dual-... Lus10031529
[exp]
25.0 0.7768

Lus10013464 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.