Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01630 723 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 688 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 592 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 478 / 1e-165 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT5G56590 350 / 2e-115 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 350 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 347 / 6e-115 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 342 / 3e-113 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 337 / 3e-111 O-Glycosyl hydrolases family 17 protein (.1) AT5G24318 320 / 2e-104 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007929 [exp] 902 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 791 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 719 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 713 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 557 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 494 / 1e-171 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 463 / 3e-160 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 350 / 5e-116 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 339 / 6e-112 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108500 [exp] 806 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 789 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.017G130200 [exp] 745 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 743 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G006100 [exp] 588 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 582 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 478 / 9e-166 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 470 / 9e-163 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 363 / 6e-121 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 343 / 3e-113 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10013465 pacid=23155074 polypeptide=Lus10013465 locus=Lus10013465.g ID=Lus10013465.BGIv1.0 annot-version=v1.0 ATGGCTGCTCTCTTCCTCCTGCTCTGTCTTCTGGCCGCTACTTCAGTTTCTGCTGCTGAAGAATCCGCCATTGGAGTCAACATAGGTACATCCCTCTCTG ACATGCCGAGCCCGACTCAAGTGGTCGCTCTTCTAAAGGCTCAAAATATCCGACACGTCAGGCTCTACGATGCAGACAGGGCAATGCTTATAGCACTTGC CAATACAGGAATCCATGTTACTGTTTCTGTACCGAATGATCAGATCCTTGGGATTGGTCAGTCGAATGCTACAGCAGCCAACTGGGTGTCTCGTAACATA ATAGCTCATGTTCCTGCAACAAACATTACAGCTATAGCAGTTGGATCTGAAGTCCTTACCACACTTCCAAATGCAGCCCCGGTGTTAGTCTCTGCCTTAA AGTTCATCTATTCCGCCCTTGTTGCAGCGAATCTCGACAGCCAGATTAAGGTCTCTACCCCACATTCCTCTTCGATCATCCTTGATTCTTTCCCTCCCTC CCAGGCCTTCTTCAACAGGACATGGAACCCGGTAATGGTTCCCTTGCTCAAGTTTCTGCAGTCTGCGGGGTCCCCCATGATGCTAAATGTGTACCCGTAC TACGATTACATGCAAGCAAATGGTGTAATCCCGTTGGACTATGCTCTTTTTCGTCCCCTCCAACCAAATAAAGAAGCGGTGGATTCGAACACCCTTCTCC ACTACACTAATGTGTTCGATGCTCTTGTCGATGCAGCCTATTTCGCAATGTCAGAACTGAACTTCACCAATGTTCCTGTAGTTGTGACCGAAACAGGTTG GCCTTCAAAGGGCGATTCCTCTGAACCGGATGCCACAGCTGATAATGCCAACACTTATAATAGCAACTTGATCAGACATGTGCTAAACAACACTGGCACA CCTAAGCATCCCGGGATTGCAATCAGCACTTTCATTTACGAGCTCTACAACGAGGACACCAGATCTGGGGCGGTATCTGAAAAGAACTGGGGGCTCTTCG ATGCCAATGGAGTTCCAATCTATATCTTACACTTGACAGGTGCTGGTACCGTGTTGGCGAACGATACTACGAATCAAACCTTCTGCGCTGCAAAGGAAGG CGCGGACCGAAAGATGTTGCAGGCAGCACTGGACTGGGCTTGTGGACCGGGGAGAGTTGATTGCTCGCCGATGCTTCAAGGAGAACCGTGTTATGAGCCT GATAACGTGATTGCTCACGCAACGTTTGCTTTCAATGCCTATTATCAACGGATGGCTAAGTCTCCCGGGACGTGTGATTTCAAAGGCGTGGCAGCGGTCA CCACTACCGATCCAAGTCATGGTTCGTGTATAGTTCCCGGAAGTGCTGGAGGAAATGGCACCTTCACGAATACGACAGCCCTGGCTCCATCCTCAAACTC TACAACTACCTCCGGTTGTCCTGTACCGTACTTCGCCCCCTTTCGTGCCGGTTCTTTCATGACTATGTGCATTTTGCTGGTGAGCATTGTGTTGTAG
AA sequence Show only first row Show all	>Lus10013465 pacid=23155074 polypeptide=Lus10013465 locus=Lus10013465.g ID=Lus10013465.BGIv1.0 annot-version=v1.0 MAALFLLLCLLAATSVSAAEESAIGVNIGTSLSDMPSPTQVVALLKAQNIRHVRLYDADRAMLIALANTGIHVTVSVPNDQILGIGQSNATAANWVSRNI IAHVPATNITAIAVGSEVLTTLPNAAPVLVSALKFIYSALVAANLDSQIKVSTPHSSSIILDSFPPSQAFFNRTWNPVMVPLLKFLQSAGSPMMLNVYPY YDYMQANGVIPLDYALFRPLQPNKEAVDSNTLLHYTNVFDALVDAAYFAMSELNFTNVPVVVTETGWPSKGDSSEPDATADNANTYNSNLIRHVLNNTGT PKHPGIAISTFIYELYNEDTRSGAVSEKNWGLFDANGVPIYILHLTGAGTVLANDTTNQTFCAAKEGADRKMLQAALDWACGPGRVDCSPMLQGEPCYEP DNVIAHATFAFNAYYQRMAKSPGTCDFKGVAAVTTTDPSHGSCIVPGSAGGNGTFTNTTALAPSSNSTTTSGCPVPYFAPFRAGSFMTMCILLVSIVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	2.0	0.9679
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	2.4	0.9511
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10035331 [exp]	3.7	0.9388
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	3.9	0.9617
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	4.0	0.9671
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	4.0	0.9612
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	4.2	0.9342
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011558 [exp]	6.5	0.9320
AT5G01910			unknown protein		Lus10022734 [exp]	7.1	0.9427
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	7.3	0.9477

Compare expression of checked genes

Lus10013465 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.