Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01620 144 / 5e-41 MEE11 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) AT3G26000 87 / 4e-19 Ribonuclease inhibitor (.1) AT3G27290 68 / 8e-13 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007930 [exp] 429 / 1e-152 AT2G01620 195 / 9e-61 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Lus10037060 [exp] 86 / 1e-18 AT3G26000 337 / 6e-112 Ribonuclease inhibitor (.1) Lus10006438 [exp] 82 / 3e-17 AT3G26000 240 / 1e-73 Ribonuclease inhibitor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G108600 [exp] 174 / 3e-52 AT2G01620 209 / 8e-66 maternal effect embryo arrest 11, RNI-like superfamily protein (.1) Potri.010G054600 [exp] 109 / 6e-27 AT3G26000 395 / 7e-135 Ribonuclease inhibitor (.1) Potri.008G179800 [exp] 105 / 8e-26 AT3G26000 330 / 1e-109 Ribonuclease inhibitor (.1) Potri.001G337300 [exp] 91 / 2e-20 AT3G26000 252 / 3e-79 Ribonuclease inhibitor (.1) Potri.008G133100 [exp] 47 / 2e-06 AT2G01620 68 / 2e-14 maternal effect embryo arrest 11, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013466 pacid=23155120 polypeptide=Lus10013466 locus=Lus10013466.g ID=Lus10013466.BGIv1.0 annot-version=v1.0 ATGGTCATATTGATTGTGCTGATAACACAAAATAAAATAAATGCTTTAAGGTTACGTGTAACACGCACGTCCTCAAGCACTTTATATCTTTTCGTACGGG CGGCGTTAGCCGACGACGTTCTCCCATGGCTGGACCTAGTCGTCGATGGAAGCCCTCTGAACCGGCGGTTGTCCGTTCAGGCTCTGATCGGACTTGCGGC GAGAGGTAAAGGCAGATTGAGGAGTTTGACTCTGGTGGATTGCTTCAACGTTACGGACGACGGTCTCCTGTCCGTCATTTCCGATAACCCGCTCATCACT AAGTTGCACGTACCAGGATGCTGGAGGCTAACACCAGAAGGAATCATAAGAGCAGTGAAGAAATTATCCGAAAACCGAGCCTCGAGCGGATTGACTATTC TCGAGATAAACAACATCCATGGAATCAGCAAGCAACACTACCAAACACTCTGCTCTTACCTTGAGCAGCAAGGCAGCACTTACCACATCGACGTGGAGGT CTGCCCAATGTGCGACCAAGTGCGAAAAGTCTACGAATGCCCCAGGCCGGGAAATGAAGAGCACGAACACTCCGGCTGCAGGAGGGGGTGCGAGTTTTGT GTGGCCAGGTGCGCGGAATGCAGGATGTGTGCTCGGTGTGTGGACGAAGAGATTCTGGACGAGGAGGCTAGCCTCTGTGCTGAAGTCTGGTGCTCGAAAT GTTGGCTGCTCCTTTCGAAATGTGATCATTGTAACAAGCCTTACTGTGCACGACATGCTGACAGGATGCACCGGGGGAAAGTAGGTCGAGGATGGCTTTG TGAGGATTGTCATGTCGAAGCTGAGGCCGGATGGGAGGCAACTACTAGCAAAGGGTACGAGTTCTTTTGA
AA sequence Show only first row Show all	>Lus10013466 pacid=23155120 polypeptide=Lus10013466 locus=Lus10013466.g ID=Lus10013466.BGIv1.0 annot-version=v1.0 MVILIVLITQNKINALRLRVTRTSSSTLYLFVRAALADDVLPWLDLVVDGSPLNRRLSVQALIGLAARGKGRLRSLTLVDCFNVTDDGLLSVISDNPLIT KLHVPGCWRLTPEGIIRAVKKLSENRASSGLTILEINNIHGISKQHYQTLCSYLEQQGSTYHIDVEVCPMCDQVRKVYECPRPGNEEHEHSGCRRGCEFC VARCAECRMCARCVDEEILDEEASLCAEVWCSKCWLLLSKCDHCNKPYCARHADRMHRGKVGRGWLCEDCHVEAEAGWEATTSKGYEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	0	1
AT1G22750			unknown protein		Lus10028718 [exp]	1.4	0.9138
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	3.5	0.9017
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	3.5	0.8972
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021573 [exp]	4.6	0.8920
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	5.0	0.8969
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	6.0	0.9038
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	6.5	0.8819
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10040884 [exp]	6.6	0.8713
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	9.8	0.8708
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10035767 [exp]	10.2	0.8731

Compare expression of checked genes

Lus10013466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.