Plant FIBer expression Database

Lus10013467 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10370 846 / 0 SDP6 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007931
[exp]
1015 / 0 AT3G10370 868 / 0.0 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G226700
[exp]
887 / 0 AT3G10370 1007 / 0.0 SUGAR-DEPENDENT 6, FAD-dependent oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01266 DAO FAD dependent oxidoreductase
Representative CDS sequence
>Lus10013467 pacid=23155115 polypeptide=Lus10013467 locus=Lus10013467.g ID=Lus10013467.BGIv1.0 annot-version=v1.0
ATGCCTATAGCGCTTTGCAACTGCTGTGTTCGCTACTTGGAGAAAGCAGTATTTAATCTCGACTATGGCCAGCTGAAGTTAGTGTTCCATGCATTGGAGG
AACGAAAACAGCTTATTGATAATGCACCCCACCTCTGCCATGCTTTGCCTTGCATGACGCCCTGTTTTAACTGGTTCGAAGTGGTATACTACTGGACGGG
GTTGAAAATGTACGATTTAGTCGCAGGGCCACGCTTACTACACCTCTCTAGATATTACACCACACGGGAGTCTATTGAGTTGTTTCCAACTCTCGCCAAG
ACCGGTAAAGATAGAAGCTTAAGGGGAACTGTGGTATATTATGACGGCCAGATGAATGACTCCCGACTTAATGTTGCCTTGGCTTGTACCGCTGCATTAG
CTGGTGCTTCCGTGCTGAATCATGCCGAAATTGTTTCTTTCCTCAAAGACGAGGCTAGTGGGAGGGTTATTGGTGCTCGTGTTAGGGATAATATATCAGG
CAAAGAGTTTGATACCTATGCAAAAGTTGTTGTGAATGCTGGTGGGCCGTTTTGTGATGCTGTGAGGAAAATGGCAAAAGGAGATGCACAACCAATGATC
CACCCAAGCAGCGGTGTGCATATTGTTCTACCCGACTATTATTCTCCAGAGGGGATGGGATTGATCGTTCCTAAAACCAAGGATGGGCGTGTGGTCTTTA
TGTTGCCGTGGTTGGGAAGAACAGTTGCTGGCACTACCGATTCCGATACTGTTATCACTCATCTTCCAGAACCACATGAAGATGAAATCCAATTCATTCT
TGATGCTATTTCCGACTATTTAGTCGTTAAGGTACGCCGTGAAGATGTTCTTTCAGCTTGGAGTGGGATTCGCCCTTTGGCTACGGATCCTTCTGCAAAG
AACACTGAGAGCATATCTAGAGACCATGTTGTCTGTGAGGAATATCCTGGTGTAGTCACCATCACTGGTGGCAAATGGACCACTTACAGAGGTATGGCAG
AAGATGCTGTTGACGCAGCTGTCAAGTCAGCGAAGCTGAATCCTCCAAATGGATCCTTAACTCATCATCTAAGGCTGACAGGTGCCGACCGCTGGCAGCC
TTCATATTTCACTGTTCTTGCACAACAATATATGCGTGCGAAGAAGTCCCATGGCGGTAAAGTTGTCCCCGGTGTCATGGATACTGCTGCAGCTAAGCAT
CTATCTCATTCCTACGGTACATTAGGTGAACGGGTGGCTGGTATTGCTCAGAATGAAGGTCTAGGGAAGAGACTTGCCCATGGTTACCCTATCCTGGAAG
CCGAAGTGGCCTATTGTGCACGCCACGAGTACTGCGAATCGGCAGTGGACTTCATCGCAAGGAGGTCACGACTCGCTTTCCTGGACACTGATGCGGCACA
TCGAGCATTGCCCCGAGTGATTGAGATACTGGCCGGGGAGCATAAATGGGATACGAAGAAGCAGAAGCAAGAGTTGGAAGAGGCCAAACGTTTCTTGGAA
ACTTTCAAGTCGTCGAGAAATGCTCAATTCCATGATGGAAAGCACTAG
AA sequence
>Lus10013467 pacid=23155115 polypeptide=Lus10013467 locus=Lus10013467.g ID=Lus10013467.BGIv1.0 annot-version=v1.0
MPIALCNCCVRYLEKAVFNLDYGQLKLVFHALEERKQLIDNAPHLCHALPCMTPCFNWFEVVYYWTGLKMYDLVAGPRLLHLSRYYTTRESIELFPTLAK
TGKDRSLRGTVVYYDGQMNDSRLNVALACTAALAGASVLNHAEIVSFLKDEASGRVIGARVRDNISGKEFDTYAKVVVNAGGPFCDAVRKMAKGDAQPMI
HPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSDTVITHLPEPHEDEIQFILDAISDYLVVKVRREDVLSAWSGIRPLATDPSAK
NTESISRDHVVCEEYPGVVTITGGKWTTYRGMAEDAVDAAVKSAKLNPPNGSLTHHLRLTGADRWQPSYFTVLAQQYMRAKKSHGGKVVPGVMDTAAAKH
LSHSYGTLGERVAGIAQNEGLGKRLAHGYPILEAEVAYCARHEYCESAVDFIARRSRLAFLDTDAAHRALPRVIEILAGEHKWDTKKQKQELEEAKRFLE
TFKSSRNAQFHDGKH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10013467
[exp]
0 1
AT3G10370 SDP6 SUGAR-DEPENDENT 6, FAD-depende... Lus10007931
[exp]
1.0 0.9233
AT2G44520 COX10 cytochrome c oxidase 10 (.1) Lus10043358
[exp]
3.3 0.8242
AT5G21040 FBX2 F-box protein 2 (.1.2) Lus10008402
[exp]
6.3 0.8493
AT3G58050 unknown protein Lus10016244
[exp]
6.3 0.8683
AT3G58050 unknown protein Lus10017239
[exp]
7.3 0.8564
AT4G00650 FLA, FRI FLOWERING LOCUS A, FRIGIDA-lik... Lus10016738
[exp]
7.7 0.7984
AT4G35870 early-responsive to dehydratio... Lus10028409
[exp]
8.1 0.8405
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10033962
[exp]
10.0 0.8098
AT1G23780 F-box family protein (.1) Lus10012441
[exp]
10.2 0.8234
Lus10011573
[exp]
11.8 0.8274

Lus10013467 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.