Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01600 724 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 712 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 535 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 531 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 457 / 2e-155 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 241 / 1e-71 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 225 / 2e-65 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 178 / 4e-48 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 146 / 5e-37 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 140 / 4e-35 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007933 [exp] 1146 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 861 / 0 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 858 / 0 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 548 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 459 / 5e-156 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 456 / 2e-154 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 320 / 4e-102 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 282 / 2e-86 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 226 / 2e-65 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110000 [exp] 856 / 0 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.008G132100 [exp] 850 / 0 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 583 / 0 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 571 / 0 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 465 / 1e-158 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 465 / 2e-158 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 453 / 7e-154 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 246 / 8e-78 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 251 / 2e-75 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 214 / 3e-61 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF07651 [flax] [poplar] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Lus10013469 pacid=23155061 polypeptide=Lus10013469 locus=Lus10013469.g ID=Lus10013469.BGIv1.0 annot-version=v1.0 ATGGGTACGCTTCAAACATGGAGGAAAGCGTATGGCGCCATTAAAGACACAACCAAAGTCGGCCTTGCTCATGTCAACAGCGATTACGCGGAACTGGATG TGGCAATTGTCAAGGCGACGAATCATGTCGAGTGCCCGCCAAAGGAGAGACACCTTAGAAAGATCTTGTTTGCTACTCAAGCGATTCGTCCCAGAGCTGA TGTTGCTTACTGTATCCACGCTCTTTCCCGGAGGTTGACCAAGACTCATAACTGGACGGTGGCATTGAAGACACTAATAGTTATCCATAGATTGCTGAGG GAAGGTGACCCTACTCTTAGAGAAGAACTGCTGAATTACTCTCAAAGAGGACGTATTCTTCAGCTTTCCAATTTCAAGGATGACTCTAGTCCCATTGCAT GGGATTGCTCTGCTTGGGTTCGTACTTATGCGCTGTTTTTGGAGGAGCGTCTTGAATGCTTTAAAATCTTGAAGTATGATATAGAAGCCGAGCGTCTCCT GAAGCCAGTTCAGGGGGAGGATAAGGGCCATAGCAGAACCAGGGAGTTGAATAGTGAGGAGCTGCTGGAGCAACTTCCTGCTTTACAACAGTTGTTGTAT CGTCTTATTGGTTGCCGGCCCGAAGGTGCAGCTGTCCGCAATTACGTTATTCAGTATGCTCTAGCTCTGGTACTGAAAGAGAGCTTTAAAATATACTGTG CTATTAATGATGGAATTATCAATCTTGTGGATAAGTTTTTCGAAATGCCAAGGCATGAAGCTGTCAAGTCCCTTGATGTCTATAGAAGAGCTGGCCAACA GGCTGCTAGCCTTTCTGATTTCTACGAAGTGTGCAAAGGATTGGAACTTGCTAGGAACTTTCAGTTCCCTGTCTTAAGAGAGCCTCCGCAATCGTTTCTT ACAACCATGGACGAGTACATACGAGAGGCACCTCGAGCTGTTTCTGTTGCAACTGAACCATTGCTCATGTTGACGTACCGGCCAGAAGAAGGTCCTTCCG AGGATGCCAAATCAAGTGACGAACCTGAGCAACTTCCTGCCGATACTGTTGCTGTTTCCCATGTCGAGGTTTCTCAGTCTCCTCCTACGCCTCCTCCTGT AGCTCATCAGAACGGCATAGATACCGGAGATCTGCTGGGGTTGAGTGATCCATCTCCAGATGCATCTGCAATAGAGGACAGAAATGCATTGGCTTTAGCT ATTGTACCCACTGAAACAGATACTGCTCCAACGTTCAATTCCGGTGCTGGTCAAGCCAAAGAATTCGATCCAACTGGATGGGAACTTGCCCTGGTCACCA CTCCTAGCAGCAACATCTCGTCTTCGAATGAGAGGCAGCTGGCCGGTGGACTGGACACGCTAACTCTGAACAGCCTATACGACGACGGTGCATACAGAGC AGCCCAGAAGCCGGTTTACGGAGCTCCAGCACCAAACCCATTCGAGGTGCACGACCCGTTTGCTCTCTCGACCAGCATTGCTCCACCACCACCGGTACAA ATGGCAGCAATGGGTCAGCATCAACATCATCAACTGCAGCGGCGGAATCAGCCGGAAGAGCCACAGGGGAGGAGGATGAGGGGGGTGGATCTTGGTGCTC ACACGATTCAAAGCCATGGATCTAAAGTTGCTAGGTACCACATGTACGATTGGCTCATCTTGTTGCTGCTTGGTGCGATAGAGATCACTCTTTACCTCAT TCATCCTTTCTATCGGTTTGTGGGGAAAGACATGATGGAGGATCTTAGATACCCCTTGAAGGATAACACAGTTCCTGTTTGGTCTTCCCAGTAA
AA sequence Show only first row Show all	>Lus10013469 pacid=23155061 polypeptide=Lus10013469 locus=Lus10013469.g ID=Lus10013469.BGIv1.0 annot-version=v1.0 MGTLQTWRKAYGAIKDTTKVGLAHVNSDYAELDVAIVKATNHVECPPKERHLRKILFATQAIRPRADVAYCIHALSRRLTKTHNWTVALKTLIVIHRLLR EGDPTLREELLNYSQRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFKILKYDIEAERLLKPVQGEDKGHSRTRELNSEELLEQLPALQQLLY RLIGCRPEGAAVRNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAVKSLDVYRRAGQQAASLSDFYEVCKGLELARNFQFPVLREPPQSFL TTMDEYIREAPRAVSVATEPLLMLTYRPEEGPSEDAKSSDEPEQLPADTVAVSHVEVSQSPPTPPPVAHQNGIDTGDLLGLSDPSPDASAIEDRNALALA IVPTETDTAPTFNSGAGQAKEFDPTGWELALVTTPSSNISSSNERQLAGGLDTLTLNSLYDDGAYRAAQKPVYGAPAPNPFEVHDPFALSTSIAPPPPVQ MAAMGQHQHHQLQRRNQPEEPQGRRMRGVDLGAHTIQSHGSKVARYHMYDWLILLLLGAIEITLYLIHPFYRFVGKDMMEDLRYPLKDNTVPVWSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10013469 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	4.9	0.7959
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	5.3	0.8107
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	13.4	0.7538
AT5G50175			unknown protein		Lus10019469 [exp]	15.7	0.7620
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001542 [exp]	22.8	0.7823
AT3G54030			Protein kinase protein with te...		Lus10035550 [exp]	23.3	0.7320
AT1G21080			DNAJ heat shock N-terminal dom...		Lus10030713 [exp]	23.9	0.7342
AT5G01990			Auxin efflux carrier family pr...		Lus10003240 [exp]	28.9	0.7297
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	31.7	0.7574
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	32.0	0.7338

Compare expression of checked genes

Lus10013469 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.