Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01180 306 / 3e-105 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2) AT3G02600 306 / 9e-105 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5) AT1G15080 280 / 9e-95 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) AT3G18220 234 / 1e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007933 [exp] 450 / 2e-154 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10035262 [exp] 346 / 3e-120 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034630 [exp] 333 / 4e-115 AT3G02600 418 / 4e-147 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10009155 [exp] 318 / 4e-108 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10028489 [exp] 308 / 1e-105 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034629 [exp] 263 / 3e-88 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10035261 [exp] 261 / 2e-87 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119400 [exp] 333 / 4e-115 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.017G119500 [exp] 314 / 2e-107 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.004G095400 [exp] 313 / 7e-107 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.008G124900 [exp] 311 / 9e-107 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.010G119300 [exp] 287 / 2e-97 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10013470 pacid=23155088 polypeptide=Lus10013470 locus=Lus10013470.g ID=Lus10013470.BGIv1.0 annot-version=v1.0 ATGTTTGGTGATGGTCAAAAACAGCTATATGCAGTCATACTGCCGATTCTGGTCTTCGTAGTCTTCTATTTCCGGAGGAGATGCGTCTATGATCTCCACC ATGCAATCTTAGGCCTCTTGTTCTCCGTGCTGGTTACTGCTGTACTCACTGATGCCATCAAAGATGCTGTGGGGAGGCCAAGGCCTGACTTCTTTTGGCG CTGCTTCCCTGACGGCAAGGATCTCTATGACCGATGGGGAGACGTGATCTGCCATGGAAATTCCGACGACATAAAGGAAGGACACAAGAGCTTCCCCAGT GGGCATGCCTCCTGGTCGTTCGCTGGATTAGGCTTTCTGTCGCTGTATCTGAGCGGCAAGATCAAGGTGTTCGACAGGCAAGGACATGTTGCGAAGCTGT GCATTGTGATCTTACCTCTCCTTGTGGCATGCCTCGTCGCCATCTCGCGAGTCAACGACTACTGGCACCACTGGCAGGACGTGTTTGCTGGATCAATCTT GGGGCTCGTGGTTTCAGGCTTCTGCTACCGGCAGTTCTTTCCGTCTCCGTACCACGATCAAGGCTGGGGTCCTTATGCATATTTCCTTGCACTGGAGGAA GAGTCACGCTCCGGTACTGCCGATCCTAATTCGGTTACTAACAATGAAGCCATGGAAACACTGCAGCATCAGCATCATCCTACGAATGGTGATCTGCAGT TTACATCTATAGATCTTGAATCTGGAGGAAGATAG
AA sequence Show only first row Show all	>Lus10013470 pacid=23155088 polypeptide=Lus10013470 locus=Lus10013470.g ID=Lus10013470.BGIv1.0 annot-version=v1.0 MFGDGQKQLYAVILPILVFVVFYFRRRCVYDLHHAILGLLFSVLVTAVLTDAIKDAVGRPRPDFFWRCFPDGKDLYDRWGDVICHGNSDDIKEGHKSFPS GHASWSFAGLGFLSLYLSGKIKVFDRQGHVAKLCIVILPLLVACLVAISRVNDYWHHWQDVFAGSILGLVVSGFCYRQFFPSPYHDQGWGPYAYFLALEE ESRSGTADPNSVTNNEAMETLQHQHHPTNGDLQFTSIDLESGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10013470 [exp]	0	1
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	4.8	0.8766
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	7.3	0.8407
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	8.7	0.8412
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	15.4	0.8479
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	15.7	0.8439
AT5G51630			Disease resistance protein (TI...		Lus10012028 [exp]	17.8	0.7846
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	18.7	0.8394
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	18.7	0.8286
					Lus10000811 [exp]	19.5	0.7986
					Lus10016602 [exp]	21.0	0.7933

Compare expression of checked genes

Lus10013470 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.