Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012561 [exp] 93 / 5e-25 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013471 pacid=23155144 polypeptide=Lus10013471 locus=Lus10013471.g ID=Lus10013471.BGIv1.0 annot-version=v1.0 ATGAACGGGTTGGGTTGCCGGAGTTGGATGATGAATCGTAGATCTCGCTACCACCGCCTCCGTGGCGCCACTACGCCGGTCAGACGGAACCTAAAGATCG CCCGGCTAGGCGGCGGTTGCGGCGGAGGAAGGGGTGTTCAGAAGTTTGTAAAGGCGGTAAGGAAAGTGATGGCTGGGTTCCACGAGGGCTACGTCCGAGT GATGGTGAAAGTGGCGGAGAAGGTGGCCGGCGGAGGAGATGGTCGGGTGTGGGAGCTGCCGTGTGGAGACAGAGTCGATGGCAGAGTGCTTCTTGAGTTG TATAGTAAGCTTGTGGCTGAGAGAGCTGGGGTGAGTATTGGTTCGGGTCAACTGTCTGACCAACTCAGATCGATTTGTAATAACCCAACTCAATTGAAAG TGGGTGGAACTGGATTGGTGTTGGTTGGTTAG
AA sequence Show only first row Show all	>Lus10013471 pacid=23155144 polypeptide=Lus10013471 locus=Lus10013471.g ID=Lus10013471.BGIv1.0 annot-version=v1.0 MNGLGCRSWMMNRRSRYHRLRGATTPVRRNLKIARLGGGCGGGRGVQKFVKAVRKVMAGFHEGYVRVMVKVAEKVAGGGDGRVWELPCGDRVDGRVLLEL YSKLVAERAGVSIGSGQLSDQLRSICNNPTQLKVGGTGLVLVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013471 [exp]	0	1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	2.0	0.9096
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	2.4	0.9166
					Lus10021347 [exp]	6.3	0.8426
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	7.3	0.8500
AT3G52740			unknown protein		Lus10021366 [exp]	13.8	0.8354
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	15.2	0.8320
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	19.6	0.8327
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	21.0	0.7898
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	22.2	0.8277
AT3G52740			unknown protein		Lus10017046 [exp]	22.8	0.8305

Compare expression of checked genes

Lus10013471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.