Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 179 / 8e-52 PR5K PR5-like receptor kinase (.1) AT1G70250 175 / 7e-50 receptor serine/threonine kinase, putative (.1) AT5G39030 171 / 2e-48 Protein kinase superfamily protein (.1) AT4G18250 170 / 5e-48 receptor serine/threonine kinase, putative (.1) AT5G38260 167 / 9e-48 Protein kinase superfamily protein (.1) AT5G39020 168 / 1e-47 Malectin/receptor-like protein kinase family protein (.1) AT1G66920 165 / 6e-47 Protein kinase superfamily protein (.1.2) AT1G67000 166 / 1e-46 Protein kinase superfamily protein (.1) AT5G38240 161 / 9e-46 Protein kinase family protein (.1) AT1G66930 160 / 5e-45 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007934 [exp] 453 / 3e-158 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10028669 [exp] 212 / 1e-69 AT5G38260 97 / 1e-23 Protein kinase superfamily protein (.1) Lus10000854 [exp] 193 / 7e-56 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10008335 [exp] 181 / 2e-52 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 177 / 9e-52 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10022359 [exp] 177 / 1e-51 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 171 / 1e-51 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025553 [exp] 171 / 4e-49 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025492 [exp] 171 / 6e-49 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125500 [exp] 239 / 8e-75 AT1G67000 309 / 3e-94 Protein kinase superfamily protein (.1) Potri.010G118300 [exp] 220 / 1e-67 AT1G66920 316 / 1e-99 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 189 / 5e-56 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 189 / 5e-56 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 187 / 2e-55 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 184 / 4e-55 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 186 / 6e-55 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 186 / 6e-55 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.017G035500 [exp] 184 / 3e-54 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 181 / 3e-53 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10013472 pacid=23155059 polypeptide=Lus10013472 locus=Lus10013472.g ID=Lus10013472.BGIv1.0 annot-version=v1.0 ATGACTGAACAATTCAAGCACGGATTAGGCCGTGGTAGGTTCGGAACCGTGTTCAAGGGTACGCTCCCCGAGAATGGCGGATTCGTTGCTGTCAAAATGA TTGATGATCGTTTGAATCTCAGCGGTGAGAACTTTATGAATGAGATATCTACGATTGCTGGAATTCGTCACCAGAATGTGCTGGGGCAGCTCAATCGGAT CGCGATAGGGACGGCTCGAGCCATCCGCCATCTGCACGATGTCTCGTCAGTTCTTCATCTAGATATCAATCCTCGAAATGTCTTGCTGGACAGTGATTTC ACTCCGAAAGTTGCAGATTTCGGCTTAGCCAAGTTGTGTAGTCGCGATCGCCTCTCCGGACGGTACATTGCACCGGAAGTGTTCTCAGATGACATCGAGG CCGTTTCGAGCAAATCGGACGTCTGCAGCTTCGGAATGCTGTTGCTAGGAATGGTCGAATCGAAGAGCAAGTGCTCTTTGGAGGTGTACTTTCCGACGTG GGTTCACGACCATCTGAGCAACGGAGGAGAATTGGAGCTAGAGAATGTGACCGAGATCGTATCCAGTGTAGCCAGAAAGCTTTGTGTGGTGGGGTTATGG TGCATCCAGAAGAGCGGATCGCAGCGTCCATCGATGGCGAAAGTGGTGGAAATGTTGACCGGTGGTCAACTGGAGCTGCCTCCAAACTCACTGTGCTTTC CAGAGCATGACTCTGCTAAGGATGTTCCATGGTCGTCGGATTCTTTCAGGCGGTTGTTGCCTCAGTCTGTGCAGCCGAGCTCGTAG
AA sequence Show only first row Show all	>Lus10013472 pacid=23155059 polypeptide=Lus10013472 locus=Lus10013472.g ID=Lus10013472.BGIv1.0 annot-version=v1.0 MTEQFKHGLGRGRFGTVFKGTLPENGGFVAVKMIDDRLNLSGENFMNEISTIAGIRHQNVLGQLNRIAIGTARAIRHLHDVSSVLHLDINPRNVLLDSDF TPKVADFGLAKLCSRDRLSGRYIAPEVFSDDIEAVSSKSDVCSFGMLLLGMVESKSKCSLEVYFPTWVHDHLSNGGELELENVTEIVSSVARKLCVVGLW CIQKSGSQRPSMAKVVEMLTGGQLELPPNSLCFPEHDSAKDVPWSSDSFRRLLPQSVQPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Lus10013472 [exp]	0	1
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	10.0	0.7716
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	12.6	0.7396
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	17.8	0.7344
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10001810 [exp]	25.2	0.7138
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	26.2	0.7298
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10029815 [exp]	32.6	0.6109
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	34.1	0.7262
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Lus10019225 [exp]	35.8	0.6981
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10015742 [exp]	36.4	0.6419
AT2G27830			unknown protein		Lus10020544 [exp]	42.0	0.6873

Compare expression of checked genes

Lus10013472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.