Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013473 pacid=23155080 polypeptide=Lus10013473 locus=Lus10013473.g ID=Lus10013473.BGIv1.0 annot-version=v1.0 ATGACGATAATTAAGCCAACCTCCTTAGACCAATTTACTGTGGCAAGGAAGTCTGTGGTAAGATTGCTGGCTGCTGAGGTTTTGGGAGCAGCGGAGGAAG CTGGTGTCGGTGTTGAAAGCGTAGGCGGCGAATCGCGGCTCCTGGGTGAGGCCACCGGCGGAGACGGACTGGGAAGGGAGGGAGCAGCTGTGATCGGGGA AGAACTTCGGGTCGGCGAGGTGGATGACGTGGCAGTCGTAGGAGATGCGACGGACGATGTAGTTGGAGGACTGGAAGTGGAAGAGTGGGGTGGTGTTGTT GAGGCAGGTGATTGGGTAGTCGGAGTCGCCGCAGGTTGGTGGGTCGGTGGTGAGGCGGAATGGGTAAGTGATGTTGGTGAGGTGTCCGCAAGGTCGAATT GCAGAGTTGAGGGAGGGATCTGGAGTGGGATTGTTTGGGGGAAAGGAGGGAAATGA
AA sequence Show only first row Show all	>Lus10013473 pacid=23155080 polypeptide=Lus10013473 locus=Lus10013473.g ID=Lus10013473.BGIv1.0 annot-version=v1.0 MTIIKPTSLDQFTVARKSVVRLLAAEVLGAAEEAGVGVESVGGESRLLGEATGGDGLGREGAAVIGEELRVGEVDDVAVVGDATDDVVGGLEVEEWGGVV EAGDWVVGVAAGWWVGGEAEWVSDVGEVSARSNCRVEGGIWSGIVWGKGGK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10013473 [exp]	0	1
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022081 [exp]	1.0	0.8105
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	3.5	0.7805
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	7.9	0.7866
					Lus10009357 [exp]	8.1	0.7776
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	9.2	0.7813
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10037117 [exp]	9.5	0.7667
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	9.9	0.7747
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	11.0	0.7769
					Lus10032433 [exp]	17.0	0.7712
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10001703 [exp]	17.9	0.6319

Compare expression of checked genes

Lus10013473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.