Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26410 227 / 2e-74 Uncharacterised conserved protein UCP022280 (.1) AT2G45060 111 / 2e-29 Uncharacterised conserved protein UCP022280 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007935 [exp] 407 / 3e-146 AT4G26410 207 / 4e-67 Uncharacterised conserved protein UCP022280 (.1) Lus10034621 [exp] 318 / 3e-110 AT4G26410 241 / 1e-79 Uncharacterised conserved protein UCP022280 (.1) Lus10035249 [exp] 314 / 1e-108 AT4G26410 244 / 7e-81 Uncharacterised conserved protein UCP022280 (.1) Lus10042878 [exp] 124 / 3e-34 AT2G45060 286 / 3e-97 Uncharacterised conserved protein UCP022280 (.1) Lus10028177 [exp] 117 / 2e-31 AT2G45060 268 / 4e-90 Uncharacterised conserved protein UCP022280 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001300 [exp] 252 / 1e-84 AT4G26410 266 / 4e-90 Uncharacterised conserved protein UCP022280 (.1) Potri.002G142900 [exp] 128 / 8e-36 AT2G45060 287 / 2e-97 Uncharacterised conserved protein UCP022280 (.1) Potri.014G058700 [exp] 110 / 5e-29 AT2G45060 293 / 4e-100 Uncharacterised conserved protein UCP022280 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013474 pacid=23155096 polypeptide=Lus10013474 locus=Lus10013474.g ID=Lus10013474.BGIv1.0 annot-version=v1.0 ATGGCGGATGGCAGTGATGAAATCAAACTAGGTAAAGAACATGTGAAGGAGACAACAAGTACTGGATCAGGTGGAAACTGGGTGGATGATTTGCGGAGGA CTGTGGTAGGATCCAAGGATTCGGAAATAAACTCTGCCAGTTCATTAACTCAATCATCTTCAACCCAATTCTACTCCTTACAGAATCACTATGTTCCAAA TGCCATCTCTAGTTTGAAGACTTATGAAGATGCATTTCTTACCAAACTCGGAGATGGACTAAGGACTGCCAAAGAACATCCTGCTGCTTGTCTTGGAGTT GCTCTCTCCTCTTCCCTTCTTCTCATGCGAGGGCCACGGAGGTTTTTGCTGCGCCAGACATTCGGAAGATTCGAGAGTGAGGAGGCAAGATTCCACAAAG CCGAGAAGAAGGTAAAAGACTTTGTTGTTTCTGTCGATCTTATGAAGAAGGAGAGCAAGAAGTTGCTGGAGAGGGCAGCTCTAGCCGAGAACGATATGAA GCATGGCTATACCGAGCTCAAGGACGCAGGAAATGAAATTCAAATGCTAGCCAAATCCACCTACAAAGTTGAGCTTCAGGCTACAGATTTGGTCGATGGT CTGCGAGCAATTCCGGGGAGGGAAGCACTGAAGCTTCGACTCGAGGTTGCTTCCATGGCGTCTAATTTGAACAAGCAGAGGACTGAGCTGGATAGGAGAA TCCTGAAGATTTCTGAACTAGGAGTACCGGTTTGA
AA sequence Show only first row Show all	>Lus10013474 pacid=23155096 polypeptide=Lus10013474 locus=Lus10013474.g ID=Lus10013474.BGIv1.0 annot-version=v1.0 MADGSDEIKLGKEHVKETTSTGSGGNWVDDLRRTVVGSKDSEINSASSLTQSSSTQFYSLQNHYVPNAISSLKTYEDAFLTKLGDGLRTAKEHPAACLGV ALSSSLLLMRGPRRFLLRQTFGRFESEEARFHKAEKKVKDFVVSVDLMKKESKKLLERAALAENDMKHGYTELKDAGNEIQMLAKSTYKVELQATDLVDG LRAIPGREALKLRLEVASMASNLNKQRTELDRRILKISELGVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26410			Uncharacterised conserved prot...		Lus10013474 [exp]	0	1
AT4G20150			unknown protein		Lus10038391 [exp]	10.1	0.7577
AT4G31460			Ribosomal L28 family (.1)		Lus10028995 [exp]	17.0	0.7565
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10008061 [exp]	26.2	0.7512
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	41.1	0.7438
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10020871 [exp]	111.7	0.6951
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	163.6	0.6595
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	218.0	0.6402

Compare expression of checked genes

Lus10013474 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.