Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47850 455 / 5e-158 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 297 / 2e-96 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 290 / 2e-93 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G02830 268 / 7e-86 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 258 / 4e-82 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT1G04990 196 / 3e-58 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 183 / 8e-53 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G12680 127 / 9e-32 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT5G63260 112 / 5e-27 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G48195 87 / 5e-21 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007941 [exp] 746 / 0 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 497 / 5e-175 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 474 / 6e-167 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 341 / 5e-113 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 340 / 2e-112 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020196 [exp] 295 / 1e-95 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 293 / 3e-95 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10035330 [exp] 217 / 3e-65 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 204 / 5e-60 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G215700 [exp] 378 / 9e-128 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.010G022500 [exp] 360 / 6e-121 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.013G086800 [exp] 292 / 1e-94 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 286 / 4e-92 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.014G159500 [exp] 226 / 4e-69 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 224 / 4e-68 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 112 / 2e-26 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 110 / 6e-26 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.015G089100 [exp] 109 / 7e-26 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 105 / 2e-24 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10013476 pacid=23155163 polypeptide=Lus10013476 locus=Lus10013476.g ID=Lus10013476.BGIv1.0 annot-version=v1.0 ATGGAGCTGTACAGTCACAACCAGTCGCAATCCGGACAGCAGACTGACTGGACTCCCGCCGGACCAGAAACTGGCCTCGAAGAATCAATGTGGAGATTAG GGCTGACGAGTAACGAACCGTACCCAGAGCGGCTTGGCGTTCCCAATTGTGTTTACTACATGCGTACTGGCTTCTGTGGGTATGGTGCTCGGTGCAGATA CAATCATCCTCGTGATCGAGCTGCGGTTGAGGAAGCTGTGAGAGCAACCGGGTTGTATCCAGAACGGGCAGGGGAGCCTCAATGTCAGTTTTACTTGAAG ACTGGAACCTGTAAATTCGGTGCATCTTGCAAGTTCCACCATCCCAAGCATAGAGGTGGATCCTTGAGCAATGCTTCTCTAAATACACATGGATACCCGT TAAGACCGGGTGAAACTGAATGCTCCTACTATTTGCAAACGGGGCACTGCAAATTCGGTTTGAATTGTAAATTTCATCACCCTCAGCCAGCTGACTCAGC ATCTGCACCCCAGTTTTATCAGCAGGTGCAGTCTCCTTCTACAAACTTGAGAGTGCGACCTCCAATCCTACCCGGCTCGTATATGCAGGGTACGTACGGG CCTCCTATGTTGCTTCCTCCTGGAGTGGTACCGATTCCCGGTTGGAGCCCTTACTCGGCACCAGTAAGCCCGGTGCTTTCCCCCGGTGCACAAACTGCAA CCTCTTTATATGGAGTGACTCAACTGTCTGCTACGAGTCCCGGCCCTGCAAGACCTTATCCGTCCCTACTGTCGTTCGGTTCCCCCTCGAGCAGTAGTAC CCAGAAGGAGCCCAGATTTCCTGAGAGGCCTGGTGAACTTGAATGTCAGTACTACTTAAGGACCGGGGACTGTAAATATGGCTCGGCTTGTAGATATCAT CACCCTCGTGATCGCGCTGTTCCTGTTTCGGATAGTATGCTCAACCCCCTTGGCCTTCCTTTGCGCCCGGGGACTCAACCATGCAGTTTCTACATGCAAA ACGGCTACTGCAAATTCGGCTCCACATGCAAGTTCGATCACCCGGTGGGTGGAGCCGTTGGATACACTCCACCCACCGCGGCATCTCTGATCGATATGCC GCCTGTTGCACCGTATCTAGTCGGGTCTCTACTGGCTACACTAGCCCCTTCTTCCCCTTCCTACGAGCTTAGACCCGAACTGATGTCAGCCCCCAGAAAC ACATCCAGCAGTTCGGTCGGGTTGGTGTTCTCGCAGACCGGATCACTTCCTCCGTTCACTGATTTGCAACTCTCAAGCCAGACTTCCCTTCCTTCGACTT CTAGTAGAAGCACGAGACATGGTGTCGAGATGCGCCGTTCTTTCTAG
AA sequence Show only first row Show all	>Lus10013476 pacid=23155163 polypeptide=Lus10013476 locus=Lus10013476.g ID=Lus10013476.BGIv1.0 annot-version=v1.0 MELYSHNQSQSGQQTDWTPAGPETGLEESMWRLGLTSNEPYPERLGVPNCVYYMRTGFCGYGARCRYNHPRDRAAVEEAVRATGLYPERAGEPQCQFYLK TGTCKFGASCKFHHPKHRGGSLSNASLNTHGYPLRPGETECSYYLQTGHCKFGLNCKFHHPQPADSASAPQFYQQVQSPSTNLRVRPPILPGSYMQGTYG PPMLLPPGVVPIPGWSPYSAPVSPVLSPGAQTATSLYGVTQLSATSPGPARPYPSLLSFGSPSSSSTQKEPRFPERPGELECQYYLRTGDCKYGSACRYH HPRDRAVPVSDSMLNPLGLPLRPGTQPCSFYMQNGYCKFGSTCKFDHPVGGAVGYTPPTAASLIDMPPVAPYLVGSLLATLAPSSPSYELRPELMSAPRN TSSSSVGLVFSQTGSLPPFTDLQLSSQTSLPSTSSRSTRHGVEMRRSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10004962 [exp]	2.2	0.8752
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023844 [exp]	5.9	0.8123
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	6.5	0.8692
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	7.1	0.8606
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	7.7	0.8593
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	8.4	0.8540
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	8.8	0.8386
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	10.8	0.8501
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	10.9	0.8329
AT2G30933			Carbohydrate-binding X8 domain...		Lus10001516 [exp]	12.0	0.8395

Compare expression of checked genes

Lus10013476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.