Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01140 481 / 1e-168 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) AT4G38970 454 / 5e-158 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G21330 454 / 6e-158 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3) AT4G26530 313 / 2e-103 Aldolase superfamily protein (.1.2) AT4G26520 305 / 2e-100 Aldolase superfamily protein (.1) AT2G36460 304 / 9e-100 Aldolase superfamily protein (.1.2) AT3G52930 300 / 3e-98 Aldolase superfamily protein (.1) AT5G03690 293 / 9e-96 Aldolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031088 [exp] 439 / 4e-152 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10035473 [exp] 438 / 1e-151 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10034619 [exp] 432 / 2e-147 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10007940 [exp] 357 / 9e-121 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10035247 [exp] 339 / 5e-114 AT2G01140 466 / 3e-165 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10032956 [exp] 305 / 4e-100 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10023870 [exp] 300 / 2e-98 AT2G36460 630 / 0.0 Aldolase superfamily protein (.1.2) Lus10014373 [exp] 299 / 8e-98 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 284 / 5e-92 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117900 [exp] 498 / 1e-175 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.008G125900 [exp] 497 / 4e-175 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.009G124100 [exp] 461 / 1e-160 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 459 / 3e-160 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 455 / 2e-158 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.001G468100 [exp] 308 / 2e-101 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.018G090100 [exp] 303 / 1e-99 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.011G165000 [exp] 303 / 2e-99 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.006G165700 [exp] 296 / 1e-96 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10013477 pacid=23155129 polypeptide=Lus10013477 locus=Lus10013477.g ID=Lus10013477.BGIv1.0 annot-version=v1.0 ATGCGGAATGAAATCGGAAGCGGAAACCGGACCTTCGAGGCCAGTTTCTGGTCCGGCGGGAGTCCAGTCAGTCTGCTGTCCGGATTGCGACTGGTTGTGA CTGTACAGCTCCATCTTTCTCCTCGAAGATTTCAACCCTTCTGTACACTCTACAGCGAGATGATGATGACGATGAAGGGGAAAGGGAAAGGAGTGGCCTT TACGGAGTACGGCGGCGGAGGGAAGTGGAGGAGGATCTCCGGAGGTGGGGCGATCCGGGGGAGAAGAGGAGCTAGAGAGAAGAGCTGGGAAAAGGGAAGG GAGGAGAAAGCTGGTGTGGGTTTAACGCAGAGAAGCGAGAAGAAGAGTCGTCTAAAGGTGATGAAGTGGAGTGAGTCAGTAGAGAGTCCCACTCTCTGCA ACTCTGAACCTCTCAAGGGACAGGATTCGAAAACGATTGCGTCGCCTGGCCGTGGGATCCTGGCGATCGATGAATCAAATGCTACCTGCGGGAAGAGGTT GGACTCCATAGGGTTGGAGAACACGGAGACCAACAGGCAGGCTTACAGGCAGCTTTTGCTGACAACTCCTGGCCTTGGTGAATACATCTCTGGCGCTATC CTGTTCGAGGAGACGCTTTACCAGTCCACTACTGATGGCAAGAAGTTTGTTGACTGCTTGGTTGATCAGAACATCGTTCCCGGAATCAAAGTTGACAAGG GTTTAGTTCCTTTACCAGGGTCTAACGATGAGTCCTGGTGCCAAGGGTTGGATGGTTTGGCGTCGAGGAGTTCTGAATATTACAAGCAAGGTGCTCGGTT TGCCAAGTGGAGGACAGTAGTTAGCATTCCATGTGAAGCTGCATATGTGCTTGCACGATATGCTGCCATTTCACAGGATAATGGACTTGTACCTATAGTT GAACCAGAGATTCTGCTTGATGGGGATCATGGGATTGAAAGAACTCTGGCGGTGGCAGAGAAAGTCTGGTCAGAGGTCTTTTTCTACTTGGCGCAGAACA ATGTTGTCTTCGAAGGCATCCTGTTGAAGCCTAGCATGGTGACACCGGGGGCCGAGCATAAAGAGAAGGCTTCTCCGGATACAATAGCAAACCACACTCT CCTAATGCTTAGGAGGAGGGTTCCTCCTGCAGTTCCTGGAATCATGTTCTTGTCTGGAGGACAATCAGAGCTTGAAGCGACCCTGAACCTGAACGCGATG AACCAGAGCGCCAACCATGGCACGTTTCATTCTCGTACGCACGAGCATTGCAGAATAGCGTGCTCAAGCCGTGGAAAGGACAGCCCGAGAACGTCGAGGC TGCACAGAAGGCGCTGCTGGTTCGCTCCAAGGCGAACTCTCTTGCTCAGCTCGGGAAGTACAGTGCTGATGGTGAGAGCGATGACGCCAAGAAGGGTATG TTCGTCAAGGGATATACCTATTAAAAGTGTGGGGCGTAGCTCGTGA
AA sequence Show only first row Show all	>Lus10013477 pacid=23155129 polypeptide=Lus10013477 locus=Lus10013477.g ID=Lus10013477.BGIv1.0 annot-version=v1.0 MRNEIGSGNRTFEASFWSGGSPVSLLSGLRLVVTVQLHLSPRRFQPFCTLYSEMMMTMKGKGKGVAFTEYGGGGKWRRISGGGAIRGRRGAREKSWEKGR EEKAGVGLTQRSEKKSRLKVMKWSESVESPTLCNSEPLKGQDSKTIASPGRGILAIDESNATCGKRLDSIGLENTETNRQAYRQLLLTTPGLGEYISGAI LFEETLYQSTTDGKKFVDCLVDQNIVPGIKVDKGLVPLPGSNDESWCQGLDGLASRSSEYYKQGARFAKWRTVVSIPCEAAYVLARYAAISQDNGLVPIV EPEILLDGDHGIERTLAVAEKVWSEVFFYLAQNNVVFEGILLKPSMVTPGAEHKEKASPDTIANHTLLMLRRRVPPAVPGIMFLSGGQSELEATLNLNAM NQSANHGTFHSRTHEHCRIACSSRGKDSPRTSRLHRRRCWFAPRRTLLLSSGSTVLMVRAMTPRRVCSSRDIPIKSVGRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	0	1
					Lus10007413 [exp]	1.4	0.8001
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	1.7	0.8308
AT3G56720			unknown protein		Lus10027280 [exp]	2.2	0.7799
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	3.5	0.7961
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	5.5	0.7973
AT1G51940			protein kinase family protein ...		Lus10027677 [exp]	11.3	0.6940
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	13.7	0.7166
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	16.3	0.7153
AT4G40045			unknown protein		Lus10043427 [exp]	18.4	0.6930
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	21.7	0.7404

Compare expression of checked genes

Lus10013477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.