Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25150 300 / 4e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 290 / 5e-99 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 251 / 1e-83 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 243 / 8e-81 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 202 / 1e-64 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 191 / 7e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 189 / 2e-59 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 169 / 2e-51 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 167 / 1e-50 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT2G39920 67 / 1e-12 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007939 [exp] 484 / 8e-176 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 239 / 3e-79 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 234 / 5e-77 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 195 / 1e-61 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 177 / 1e-54 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 177 / 1e-54 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 145 / 3e-43 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 117 / 8e-33 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10038847 [exp] 81 / 5e-19 AT5G51260 97 / 2e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232900 [exp] 324 / 2e-112 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 256 / 2e-85 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 243 / 7e-81 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 212 / 2e-68 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 191 / 3e-60 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 183 / 5e-57 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 177 / 3e-55 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 71 / 3e-14 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10013478 pacid=23155109 polypeptide=Lus10013478 locus=Lus10013478.g ID=Lus10013478.BGIv1.0 annot-version=v1.0 ATGCCTTCTTCCTTCTCCGCACTTTCCCTCATCGTCTCATTCCTCTTCGCATCATCCCTCCAAGCATCATCGGAGCTCAGCCATCTCCCGCGACCTCTGA TCCTCGAACATCCGCAAACCCAACAAGCCAATCTGCAGTGCGACAGCTGGAGAATCGCAGGGGAGGCCAACAATTTGAATCCGTGGAAGACCGTCCCGGA AGAATGCCAGGACTACGTCAAAAGCTACGTCACCGGGAGGGGATACCTTGTCGATCTCGAAAGGGTTTCCGATGAGGCGGCGGCTTACGCCAAGGGATTG AAGTTGGGGAATGATGACGGGATGGATGTTTGGGTATTTGACGTTGACGAGACTTTGCTCTCCAATCTTCCTTATTATGCTCGGCGTGGATTCGGGTCAG AGGTGTTTGATGCAGTGGATTTTGACAACTGGGTGGATGAAGCAGCAGCGCCTGCTCTGGAGCCAAGCTTGAAACTTTATCACCAGCTTCTGGAGTTGGG CATCAAAATCATTCTTCTGACTGGCCGCAGTGAGGCCCAGAGGGTTGTCACCGAGGAAAACCTGAGAGTTGCTGGTTTCTACATCTGGGATAGACTTATC TTGAGAGGTTTAGAAGACCATGGGAAGCTGGCGGCAACGTACAAATCAGAGAAGAGAAGTTTGATGCTGGAACAAGGGTACAGGATCGTGGGCAACTCTG GGGACCAATGGAGTGATTTGTTGGGATGCCCTATCTCGAACCGGTCGTTTAAGATCCCTAATCCTATGTATTTCATCTCTTGA
AA sequence Show only first row Show all	>Lus10013478 pacid=23155109 polypeptide=Lus10013478 locus=Lus10013478.g ID=Lus10013478.BGIv1.0 annot-version=v1.0 MPSSFSALSLIVSFLFASSLQASSELSHLPRPLILEHPQTQQANLQCDSWRIAGEANNLNPWKTVPEECQDYVKSYVTGRGYLVDLERVSDEAAAYAKGL KLGNDDGMDVWVFDVDETLLSNLPYYARRGFGSEVFDAVDFDNWVDEAAAPALEPSLKLYHQLLELGIKIILLTGRSEAQRVVTEENLRVAGFYIWDRLI LRGLEDHGKLAATYKSEKRSLMLEQGYRIVGNSGDQWSDLLGCPISNRSFKIPNPMYFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25150			HAD superfamily, subfamily III...		Lus10013478 [exp]	0	1
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10039392 [exp]	3.2	0.8187
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	5.3	0.8191
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	5.5	0.8166
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	8.7	0.8161
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	10.0	0.7868
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	11.7	0.8074
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	13.0	0.8083
AT3G21790			UDP-Glycosyltransferase superf...		Lus10036087 [exp]	13.7	0.7636
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	20.9	0.8140
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	21.2	0.7939

Compare expression of checked genes

Lus10013478 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.