Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01130 1446 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G48650 1417 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G04895 1259 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G35920 805 / 0 RNA helicase family protein (.1) AT1G58060 536 / 3e-168 RNA helicase family protein (.1) AT1G58050 489 / 6e-151 RNA helicase family protein (.1) AT2G47250 327 / 2e-97 RNA helicase family protein (.1) AT3G62310 324 / 1e-96 RNA helicase family protein (.1) AT4G18465 288 / 7e-84 RNA helicase family protein (.1) AT5G13010 297 / 3e-83 EMB3011 embryo defective 3011, RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007938 [exp] 2169 / 0 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 1321 / 0 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10034126 [exp] 1246 / 0 AT5G04895 1904 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043459 [exp] 1244 / 0 AT5G04895 1897 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 1222 / 0 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10009022 [exp] 758 / 0 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10009660 [exp] 555 / 0 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10005261 [exp] 291 / 5e-84 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10029806 [exp] 286 / 6e-80 AT2G30800 1250 / 0.0 helicase in vascular tissue and tapetum (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117800 [exp] 1654 / 0 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G042500 [exp] 1406 / 0 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G246000 [exp] 1284 / 0 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G014100 [exp] 1247 / 0 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G068900 [exp] 802 / 0 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.004G222900 [exp] 549 / 6e-173 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 323 / 6e-96 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 322 / 8e-96 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.005G206500 [exp] 273 / 1e-75 AT2G30800 1374 / 0.0 helicase in vascular tissue and tapetum (.1) Potri.010G172500 [exp] 269 / 6e-74 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10013479 pacid=23155152 polypeptide=Lus10013479 locus=Lus10013479.g ID=Lus10013479.BGIv1.0 annot-version=v1.0 ATGAAAGACCGGCCGCCGTCCCCTTACGGCGCCGTTTACGTCCCTCCGCACCAGCGTCTTCGCTCCGTGATCGTATCCCCCAATTTCAACTCCTCCTCTG CATCTTCTCATCTTCTGGAGTCCAGAACTACTGACAGTCGATGCGCTGCTCTCATCCGCAGTAAAGCCAGCAGTCCTTCTCCTACGGAGCATCAGCATAG AAATGGCGGTGCTGCTGAGGTCTGTAACAAGAATCCGATTCCGAAGTTTGCTTCTGCCTGCGTCGATTCTGTCTACGAGGACGGGTCTGATCACCATATG GAGTCCTTGCCAGTCCACCCATCAGGAACTAATATGTCTGACAGCATTGAAGAGTGGAGATGGAAGTTCACGATGCTTTTGCGTGATAAAGAGAAGAAAG AAGTGGTATCGAGGGAGAAAAAGGACAGACGTGATTTCGAGCAACTAGCAGCTTTAGCAAGCAAAATGGGTCTATATAGCCGTTTGTATGTGAAAGTTGT TGTCTTTAGCAAAGTCCCACTGCCGAACTACAGATTTGATTTGGATGATAAGCGTCCTCAACGGGAGGTTAGCTTGCCTCTTGGCGTATTGAAAAGAGTT GATACGTATCTTGGAGACTATGTCTTCCAAAAGTCCAAGACTAAGGAATGCTGTCTGGATATGTCTAGATCAAACAGTAGTGGTAGCCTTGGGGCTGATG AAGGGCTGTTTGAGCTACCGGAATCCCTGGCTTCTAGCAATATTGTGATGGAGAAAGCCTTGCGGCGGAGAAGTCAACATTTGTATGAGAAGCAATTGTC TTGGCAGGAGTCTCCAGAAGGAAGGAAAATGATGGAATTTCGCAAAACCCTTCCTGCATATAAGGAGAAGAATGCAATATTGACAGCTGTTGCACAGAAT CAGGTGGTCATCATATCAGGTGAGACTGGTTGCGGTAAGACAACACAGATTCCCCAGTTTATCCTGGAATCTGAAATAGATGTTGGTCGTGGAGCTGCTT GTAGTATTATATGTACACAACCAAGACGAATATCTGCAATCTCTGTTTCTGAAAGAGTTGCTACGGAGAGAGGAGAGAAACTAGGAGAATCTGTGGGTTA TAAGGTTCGGCTTGAAGGTATTAAAGGCAGGGAAACACACCTCCTCTTCTGCACAACAGGAATCTTATTGAGAAGATTACTTGTGGATCGAAGCTTGAAG GGAGTAAGCCATGTGATAGTGGACGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTTAAAGATCTGCTATCTCGTCGACCCGACC TGAGGCTTGTTCTGATGAGTGCAACCCTTGATGCGGAGCTTTTCTCATCCTACTTTAACAAAGCTCCTATTCTCCGTATCCCAGGTTTTACATACCCAGT AAAAACTCATTTCCTGGAAAATATTCTGGAAATGACGGGATACCGTTTGACTCCTTACAATCAAATTGACGATTATGGTCAAGAAAGGTCATGGAAACTA AACAAGCAAGGTCCAAAAAGGAGAAAGAGCCAAATTGCTTCAGCAGTTGAAGATGCACTCAGAACAGCTGATTTCAGGAAATACAGAAAAGAGACTCAGG ATTCTCTGTCTTTCTGGAATCCTGATTGCATTGGTTTTAATCTGATCGAGTATCTATTGACCTACATCTGTGAAAATAATAGACCTGGTGCTATTCTGGT TTTTTTGACTGGGCTTGATGACATAAGCTCTTTAAAGGACAAACTCCAAGCTCATACCATCTTGGGAGATCCTAGACGAGTCTTGTTGCTTACTTGCCAT GGCTCAATGGCCAGCTCAGAACAGAGGTTAATATTTGATGCGCCACCTTATGGCGTGAGGAAAATAGTGCTGGCCACGAATATTGCTGAGACAAGCCTCA CAATAAATGATGTTGTCTATGTTATTGAGTGTGGGAAAGCAAAGGAGACTTCATACGATGCTCTCAATAACACTCCTTGTCTGCTCCCTTCCTGGATTTC TAAAGTTTCTGCTCAACAAAGAAGAGGAAGAGCAGGCCGGGTTCAACCGGGAGAATGTTACCATCTATATCCAAGATGTGTATATGATGCTTTTCCGGAG TATCAGTTGCCAGAAATCTTGAGAACGCCTTTACAGTCTCTCTGTTTGCAAATCAAGAGTTTGAAACTTGGAAGTATCTCTGAGTTTCTGTCTCAGGCTT TGCAATCACCCGAGCTACTGGCGGTCGAGAAAGCTATTGAGTACTTGAAAGTTATCGGCGCCTTGGATAAAAATGAAGATTTGACTGTGCTAGGACAGTA CTTGACTAGGCTTCCTGTGGAGCCTAAACTCGGAAAGATGCTCGTTTTGGGTGCTATATTTAATTGCCTGGATCCGATTTCAACCATTGTTGCAGGACTA AGTGTTAGAGATCCTTTCTTGACACCACTTGACAAGAAAGATCTTGCAGATGCCGCGAAAGCTCAGTTTTCACGTGACTATAGCGACCACATGGCCCTTG TTCGGGCCTTTAATGGCTGGAAAGATGCTGAACGGAATTTCGCTGGTCATGACTATTGCTGGAAGAATTTCCTCTCTGTTCAATCCATGAAGGCTATTGA TTCTCTCAGGAAGGAGTTCTACTCCTTGATAAGAGATACTGGCCTGATTGATAGTAATGCAAACAGTAACGGTTGGAGCCACGAGGAGCACCTTGTTCGA GCAGTTATTTGTTACGGCCTTTACCCCGGAGTGTGCTCTGTCGTGAACAATGAAAAGTCGTTTTCGCTCAAAACTATGGAGGATGGTCAAGTGCTGCTAT ATTCTAACTCTGTCAATGCTCAGAATTCCAGCATCCCCTATCCATGGTTAGTTTTTAACGAGAAGGTCAAAGTCAATGCCGTCTTCCTCCGTGACTCCAC AGCTGTTTCAGACTCAATGGTGCTTCTTTTCGGTGGAACCATCACGAAAGGGGATGCTGATGGTCACTTGAAGATGCTGGGAGGATATCTGGAATTCTTC ATGAAACCGGCAGTGGCAGAAATGTATACCAACTTGAAAAGAGAACTGGATGAGCTTATTCAGATGAAACTACACAACCCGAAAATGAGCTTAAAGCCAC ACGACGAGCTTTTCTCAGCAGTACGGTTACTCCTCTTTGAGGATCGCTCCGATGGAAGATTCGTATTTGGTCAGCTGCTCAACCTTACGAAACCCCCCGT GGTGGCTTCAACGACAAGAAAGCCGATTCTGGCATCAGGAGGTGACAGTGGACCCGGAGGCGATAACCCAAAGAGCCAACTCCAAACGCTGCTGACGAGA GCCGGGTACACTGCGCCGGTATACAAAACGAAGCAACTTAAGAACAACCAGTTCCGGTCCACCGTGGAGTTCAACGGCATGGAAGTGATGGGGAATCCTT ACGGAAACAAGAAGAGCGCGGAGAAGGATGCCGCGGCAGAGGCCCTGCTGTGGTTGATGGGTGGATCTCGGACCGGTCGTGATTACATCGACCAAATGTC GATTCTGCAGAAGAGAAGCAAGAAGAATCATTTATGA
AA sequence Show only first row Show all	>Lus10013479 pacid=23155152 polypeptide=Lus10013479 locus=Lus10013479.g ID=Lus10013479.BGIv1.0 annot-version=v1.0 MKDRPPSPYGAVYVPPHQRLRSVIVSPNFNSSSASSHLLESRTTDSRCAALIRSKASSPSPTEHQHRNGGAAEVCNKNPIPKFASACVDSVYEDGSDHHM ESLPVHPSGTNMSDSIEEWRWKFTMLLRDKEKKEVVSREKKDRRDFEQLAALASKMGLYSRLYVKVVVFSKVPLPNYRFDLDDKRPQREVSLPLGVLKRV DTYLGDYVFQKSKTKECCLDMSRSNSSGSLGADEGLFELPESLASSNIVMEKALRRRSQHLYEKQLSWQESPEGRKMMEFRKTLPAYKEKNAILTAVAQN QVVIISGETGCGKTTQIPQFILESEIDVGRGAACSIICTQPRRISAISVSERVATERGEKLGESVGYKVRLEGIKGRETHLLFCTTGILLRRLLVDRSLK GVSHVIVDEIHERGMNEDFLLIVLKDLLSRRPDLRLVLMSATLDAELFSSYFNKAPILRIPGFTYPVKTHFLENILEMTGYRLTPYNQIDDYGQERSWKL NKQGPKRRKSQIASAVEDALRTADFRKYRKETQDSLSFWNPDCIGFNLIEYLLTYICENNRPGAILVFLTGLDDISSLKDKLQAHTILGDPRRVLLLTCH GSMASSEQRLIFDAPPYGVRKIVLATNIAETSLTINDVVYVIECGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFPE YQLPEILRTPLQSLCLQIKSLKLGSISEFLSQALQSPELLAVEKAIEYLKVIGALDKNEDLTVLGQYLTRLPVEPKLGKMLVLGAIFNCLDPISTIVAGL SVRDPFLTPLDKKDLADAAKAQFSRDYSDHMALVRAFNGWKDAERNFAGHDYCWKNFLSVQSMKAIDSLRKEFYSLIRDTGLIDSNANSNGWSHEEHLVR AVICYGLYPGVCSVVNNEKSFSLKTMEDGQVLLYSNSVNAQNSSIPYPWLVFNEKVKVNAVFLRDSTAVSDSMVLLFGGTITKGDADGHLKMLGGYLEFF MKPAVAEMYTNLKRELDELIQMKLHNPKMSLKPHDELFSAVRLLLFEDRSDGRFVFGQLLNLTKPPVVASTTRKPILASGGDSGPGGDNPKSQLQTLLTR AGYTAPVYKTKQLKNNQFRSTVEFNGMEVMGNPYGNKKSAEKDAAAEALLWLMGGSRTGRDYIDQMSILQKRSKKNHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10013479 [exp]	0	1
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	1.7	0.8770
AT2G17030			F-box family protein with a do...		Lus10012519 [exp]	4.7	0.8042
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	6.6	0.8234
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	15.5	0.8290
AT1G72390			unknown protein		Lus10008132 [exp]	15.7	0.7776
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	21.6	0.8067
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	24.0	0.8072
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	24.3	0.8229
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	24.7	0.8009
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	27.9	0.7749

Compare expression of checked genes

Lus10013479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.