Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 286 / 3e-93 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 260 / 9e-84 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 259 / 3e-83 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007942 [exp] 753 / 0 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 496 / 1e-175 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 492 / 9e-174 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 299 / 5e-98 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 299 / 7e-98 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10038190 [exp] 246 / 6e-78 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 246 / 8e-78 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10011839 [exp] 244 / 6e-77 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 233 / 5e-73 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117400 [exp] 497 / 5e-176 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 424 / 2e-147 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.008G126200 [exp] 409 / 5e-142 AT1G08510 239 / 2e-75 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 296 / 6e-97 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 296 / 6e-97 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 289 / 3e-94 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 289 / 4e-94 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 282 / 8e-92 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 250 / 3e-79 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 246 / 6e-78 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10013480 pacid=23155068 polypeptide=Lus10013480 locus=Lus10013480.g ID=Lus10013480.BGIv1.0 annot-version=v1.0 ATGTCTTCAGTTTTCTCCTACAACACCACAATTTGCCTGCGTGTGCCAACGATCAGGTGCGAAGACGTGAACAGCCGGAACAGATCAAACAATGTGAAGA TCAAGATCAACGGCGTAAATTCGTCGTCAGTTTCAGCTTCACCATCCTACGGTGGAGGAGGCGCCGCCGCGATCAAGCTTGATGATCATCATCATCATGA TCATAACAACAACATCACAGTGATGGGGAAACAGAGCACGAGGCAGAACATACCCACGGAGAAGAAGTACGTCGACCGACACCGGCAGGGTCTCATGGTC GACGACGGCGTGGCTTACAGGCAGACCGTCGTGGTTCGATCTTACGAGGTCGGGCCCGACAAGACCGCCACCCTCGACAGCCTCCTCAACCTTCTTCAGG AAACGGCGCTGAATCATGTGTGGATGTCGGGGCTGTTGGGAAATGGGTTCGGGGCGACCCATGAGATGGTCAGGAACAACTTGATTTGGGTCGTGTCGAG AATGCAAGTTCAAGTCGATCATTACCCTATCTGGGGTGAGATAGTGGACATCGACACGTGGGTCGGAGCATCGGGGAAGAATGGAATGCGTCGTGACTGG CTCATTCGTAGCCAGTCCACCGGCCAGGTCTTTGCCAGCGCCACCAGCACGTGGGTGATGATGAACGAGAAAACGAGAAAGTTGTCAAAGATGCCGGAGG AAGTTAGGGACGAGATATCGTCTTGGTTCATCGAGAAACAAGCCATCATCCAACAGGATGATCACACGGTCGAGAAAATCCCCAAATTGGACGACAATGC TAAATATGTCAACACTAACCTCAAGCCAAGGAGGGGCGACTTGGACATGAACCAACATGTCAACAACGTCAAGTATGTCAAATGGATGCTCGAGACGATC CCGGATGAGTTTGTGGAAGAGCACCAATTGTCGGGGATCACACTAGAGTACAGAAGAGAATGCGGGAGTTCGGACATAGTCGAGTCTCTTTGCGATCCCG AAGACGAGATCGTCCAAGGGATCGACATCCTTCAAAACGGATTCAGTGGCAATAACATGAACATTAGCCTTTTGAATGGCTTCACTTTGGCGGCAGAGAT CATGGAAGGCAACGGCCTCATGGCCGGAAAACCCCCGAGATTCACGCATTTGCTCCGAACCAAGCTGACCGACGATAAGCAAGACTATGGAGAGATGGTC AGGGGGAAGACCACGTGGAAGAAGCGCCTCCAGCTGCCGCCAATCATCGAGGACTGA
AA sequence Show only first row Show all	>Lus10013480 pacid=23155068 polypeptide=Lus10013480 locus=Lus10013480.g ID=Lus10013480.BGIv1.0 annot-version=v1.0 MSSVFSYNTTICLRVPTIRCEDVNSRNRSNNVKIKINGVNSSSVSASPSYGGGGAAAIKLDDHHHHDHNNNITVMGKQSTRQNIPTEKKYVDRHRQGLMV DDGVAYRQTVVVRSYEVGPDKTATLDSLLNLLQETALNHVWMSGLLGNGFGATHEMVRNNLIWVVSRMQVQVDHYPIWGEIVDIDTWVGASGKNGMRRDW LIRSQSTGQVFASATSTWVMMNEKTRKLSKMPEEVRDEISSWFIEKQAIIQQDDHTVEKIPKLDDNAKYVNTNLKPRRGDLDMNQHVNNVKYVKWMLETI PDEFVEEHQLSGITLEYRRECGSSDIVESLCDPEDEIVQGIDILQNGFSGNNMNISLLNGFTLAAEIMEGNGLMAGKPPRFTHLLRTKLTDDKQDYGEMV RGKTTWKKRLQLPPIIED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10013480 [exp]	0	1
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	3.5	0.9415
AT1G24405			unknown protein		Lus10036923 [exp]	6.8	0.9303
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	7.5	0.9206
AT1G24405			unknown protein		Lus10037061 [exp]	7.7	0.9280
AT3G14260			Protein of unknown function (D...		Lus10008485 [exp]	7.9	0.8413
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	9.5	0.9186
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	10.9	0.9151
AT4G20820			FAD-binding Berberine family p...		Lus10038436 [exp]	13.3	0.9045
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	13.6	0.9155
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	16.5	0.9148

Compare expression of checked genes

Lus10013480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.