Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01110 412 / 4e-143 TATC, PGA2, APG2, UNE3 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007945 [exp] 397 / 7e-139 AT2G01110 392 / 7e-139 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G117200 [exp] 439 / 3e-153 AT2G01110 388 / 4e-135 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00902 [flax] [poplar] TatC Sec-independent protein translocase protein (TatC)
Representative CDS sequence Show only first row Show all	>Lus10013482 pacid=23155137 polypeptide=Lus10013482 locus=Lus10013482.g ID=Lus10013482.BGIv1.0 annot-version=v1.0 ATGGGAAGCACCAGCGCTGCTCTATTTCCTCACTCGAAGCTCATCTATGGCTGCTGCTCCTACAGTAAACCACTGGCGTCACACCCGCCGCAGCGCCAAT TACAGCTGAGCTCGCCGAAGTTCGAGAGTCTACCGACGAGGAGAGGTAGATCGGGATTGGGTGCTTCGAGGAAGAACAGGAGGAGCTACGTGGACAGATT CGCGCGCTTCGCCGCCGTGGATGATAGTGTCAGCGGGAAACAAGAAGAAACTTCCAGCTCTGGCGCCACGTCAGCCGTCGAGGAACGGCCGCCTGTTGGC ATCACAAAAGCAACCTCTGATCAAGAAACCAAAGGAAGTGCGATCTACGATTTCCTCTATCCCGACAAAGACCTACTCCCTGACGATACAGAGATGAGCT TGTTCGATCATCTCGAAGAGCTCCGCCAGAGGCTGTTTGTATCTGTATTAGCTGTTGGGGGTGCTATTGTAGGATGCTTTGCTTTCTCTAAGGAACTGGT TATGATTCTTGAAGCTCCCGTCAAGACTCAAGGCGTTCGCTTTCTGCAACTCGCTCCAGGAGAGTTCTTCTTCACAACCTTGAAGGTGTCTGGATACTGC GGCCTTCTATTGGGGAGCCCGGTGATTCTGTATGAGATCATAGCATTCGTACTCCCGGGTTTGACAAAGGCCGAAAGAAGGTTCTTGGGGCCGATTGTTC TCGGGTCATCTGTACTGTTCTACGCCGGAATTGTGTTCTCTTACTTGGTACTCACGCCAGCAGCGTTGAACTTCTTTGTGAGCTATGCCGAAGGTGCTGT TGAGTCTCTGTGGTCTATCGATCAGTACTTCGAGTTTGTCCTCATCCTCATGTTCAGCACTGGCTTGTCTTTCCAGGTTCCGGTGATACAAATTCTGCTC GGACAAGTCGGTCTGGTCTCAGGAGACCGGATGTTATCGGTCTGGAGATACGTCGTGGTTGGTGCAGTCGTTGCAGCAGCGGTACTCACACCATCGACCG ATCCTCTCACTCAGATGCTCTTAGCAGGGCCGCTGCTCGGTCTCTATCTCGGTGGCGCATGGGTGGTGAAGCTAAGTGGACGTGGGTTGTGTCTTGATGA TACGATCTCGGTTGCCAATTCTTTGAATTTCATCTCTTCAGGCGACAAGTCGTCCCCTAGATCATCACTCAAGCCACTGTCCTCTTCTTGGTTCCCACCT TCTGAATCATCAAGGACGACATCGTCTGATGATGACCCGGGCTTCAGTTCCTTCATCTCGCGAAGAAAATCTTTCATCGAAGATATAATGTGCGTCGTTG ATCGTCTGAGAGCTGCGGTGTTAGTCGAAGGTGTCGTCTTCAATGCTGAACACTAA
AA sequence Show only first row Show all	>Lus10013482 pacid=23155137 polypeptide=Lus10013482 locus=Lus10013482.g ID=Lus10013482.BGIv1.0 annot-version=v1.0 MGSTSAALFPHSKLIYGCCSYSKPLASHPPQRQLQLSSPKFESLPTRRGRSGLGASRKNRRSYVDRFARFAAVDDSVSGKQEETSSSGATSAVEERPPVG ITKATSDQETKGSAIYDFLYPDKDLLPDDTEMSLFDHLEELRQRLFVSVLAVGGAIVGCFAFSKELVMILEAPVKTQGVRFLQLAPGEFFFTTLKVSGYC GLLLGSPVILYEIIAFVLPGLTKAERRFLGPIVLGSSVLFYAGIVFSYLVLTPAALNFFVSYAEGAVESLWSIDQYFEFVLILMFSTGLSFQVPVIQILL GQVGLVSGDRMLSVWRYVVVGAVVAAAVLTPSTDPLTQMLLAGPLLGLYLGGAWVVKLSGRGLCLDDTISVANSLNFISSGDKSSPRSSLKPLSSSWFPP SESSRTTSSDDDPGFSSFISRRKSFIEDIMCVVDRLRAAVLVEGVVFNAEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	0	1
AT2G46100			Nuclear transport factor 2 (NT...		Lus10007918 [exp]	3.7	0.9221
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10042345 [exp]	4.2	0.9294
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	5.7	0.9113
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Lus10012243 [exp]	9.5	0.9130
AT4G38225			unknown protein		Lus10026560 [exp]	9.5	0.8997
AT5G61820			unknown protein		Lus10004249 [exp]	11.4	0.9031
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	14.7	0.8978
AT1G54520			unknown protein		Lus10001794 [exp]	16.2	0.8456
AT2G35260			unknown protein		Lus10030958 [exp]	18.5	0.8951
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10002043 [exp]	20.4	0.8763

Compare expression of checked genes

Lus10013482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.