Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30190 867 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 863 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 848 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT1G80660 847 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT2G24520 845 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G42640 843 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 840 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G62670 815 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 806 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT4G11730 727 / 0 Cation transporter/ E1-E2 ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001437 [exp] 1475 / 0 AT4G30190 1314 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026093 [exp] 1287 / 0 AT1G80660 912 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042445 [exp] 1272 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042903 [exp] 1140 / 0 AT3G60330 918 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10007948 [exp] 1014 / 0 AT4G30190 998 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10001631 [exp] 983 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026944 [exp] 872 / 0 AT2G24520 1128 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10026946 [exp] 870 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10004370 [exp] 865 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090300 [exp] 919 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 914 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.014G046300 [exp] 904 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Potri.006G275000 [exp] 891 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 883 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G005900 [exp] 863 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 862 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G188600 [exp] 862 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.003G179800 [exp] 847 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Potri.012G071600 [exp] 816 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10013483 pacid=23155116 polypeptide=Lus10013483 locus=Lus10013483.g ID=Lus10013483.BGIv1.0 annot-version=v1.0 ATGGCGAACAACTCCAGTCTCGAGGACATAAAAAACGAGACTGTCGATCTGGAGAAGATCCCAGTCGAGGAAGTGTTTCAGCAGCTGAAATGTTCCAAGG AAGGGTTGTCCTCCGAGGAGGGAGCCAACCGTCTCCAGATTTTTGGACCCAACAAGCTCGAAGAGAAAAAGGAGAGCAAGATCCTCAAGTTCTTGGGGTT CATGTGGAATCCGCTTTCGTGGGTTATGGAAGCTGCAGCCATCATGGCTATTGCCCTGGCTAACGGTGGTGGAAAGCCGCCGGATTGGCAGGACTTTGTT GGTATTGTCTGCTTGTTGGTTATCAACTCCACCATTAGTTTCATTGAAGAGAACAACGCAGGTAACGCCGCCGCTGCTCTCATGGCTGGTCTTGCCCCTA AAACCAAGGTACTTCGAGATGGTAAATGGAGTGAACAGGAAGCTGCGATTCTCGTACCAGGAGACATCATTAGCATCAAGTTGGGAGACATCGTCCCTGC TGACGCACGTCTTCTCGAAGGTGATCCGTTAAAAATTGATCAATCAGCTCTCACAGGTGAATCACTTCCAGTGACCAGGCATCCAGGGCAGGAGGTTTTC TCCGGTTCAACTTGTAAACAGGGAGAACTCGAGGCTGTCGTTATTGCTACTGGTGTTCATACATTCTTCGGTAAGGCTGCCCATCTTGTGGACAGCACCA ACCAAGTTGGACACTTCCAGCAGGTGCTCACTGCCATCGGTAACTTCTGCATCGTCTCCATAGCAATCGGAATGGTCATCGAGATCATAGTCATGTATCC GATCCAGCACCGCGAGTACAGGAAAGGAATCGATAACCTCCTTGTCCTCTTGATTGGAGGTATCCCTATTGCCATGCCTACCGTCTTGTCTGTGACAATG GCTAATTGTGGCCCCAACATCCTCGCACAAGGGGGCATAACCAAGCAAGAGCGGGTATTCAAGAAGTCCATTTCCTTCCGTTCAATCCCGTGGACAAAAG AACTGCCCTCACTTACATTGATGCTGATGGTAACTGGCACCGTGCATGTAAAGGAGCTCCTGAGCAGAGACGATTTGAGGAAGAAAGTCCATTCTGTCAT TGAAAAGTTCGCTGAACGCGGGCTTCGATCTCTAGGAGTTGCTAGACAGGTGGTTCCAGAGAAAACAAAGGAAAGCGCAGGTGGTCCCTGGGAGTTTGTC GGATTGTTGAATCTCTTCGATCCGCCTAGACATGACAGTGCAGAAACAATTCGTCGGGCTCTTCACCTTGGTGTAAACGTCAAGATGATCACTGGTGATC AACTCGCCATTGGTAAGGAAACTGGTCGAAGACTTGGAATGGGAACTAACATGTACCCATCTGCTGCCCTTCTGGGCGAGCACAAGGATGCTAGCATCGC CTCTATTCCGGTCGAAGAATTGATCGAGAAAGCTGACGGATTCGCTGGAGTGTTCCCTGAGCACAAATATGAAATAGTGAAGAAACTGCAAGAATTGAAG CACATTGTCGGCATGACTGGTGACGGTGTGAATGATGCTCCTGCTTTGAAGAAGGCAGACATTGGTATCGCAGTTGCTGATGCTACAGATGCTGCACGAG GCGTTTCCGACATTGTTCTTACCGAGCCTGGTTTGAGTGTTATTATTAGTGCTGTGCTTACTAGCAGAGCAATCTTCCAAAGGATGAAGAATTACACTAT ATATGCAGTGTCCATCACAATCCGTATAGTGTTGGGTTTCATGCTTATTGCTCTCATCTGGAAGTTTGATTTCTCACCCTTTATGGTCCTGATCATTGCC ATCCTTAATGACGGTACTATCATGACAATCTCCAAGGACAGAGTGAAACCATCGCCTCTACCCGATAGCTGGAAGCTTAAGGAGATCTTTGCAACTGGAG TCGCCCTCGGTAGCTACTTGGCATTGATGACCGTTATATTCTTCTGGATCATGCACAAGACTGACTTCTTCCCGGATAGATTTGGGGTGAGGCCAATTAA GGGCAGCGAGGATGAGATGATGAGCGCTCTGTACCTGCAAGTGAGTATAGTGAGCCAGGCACTGATCTTTGTGACGAGATCTCGCAGCTGGTCGTTCCTC GAGAGGCCCGGGCTACTTCTGCTGTTCGCCTTCGGTGTTGCTCAACTGGTTGCAACGTTGATAGCAGTATATGCAAACTGGGGGTTCGCAAGGATACAGG GAATTGGGTGGGGATGGGCAGGAGTCGTCTGGCTATACAGCATTGTGTTCTATTTCCCGCTCGATATCATGAAGTTCTTCATCCGTTATGTCCTCAGCGG AAAGGCCTGGACCAACATGCTAGAAAACAAGACCGCATTCACGACGAAGAAAGACTACGGGAAAGAGGAAAGGGAGGCCCAATGGGCGCTAGCACAAAGG ACGCTGCACGGACTGCAGCCACCGCAGGAGAGTAGCCAGGGCGGAATCTTCAACGAGAAGAGCAGCTACCGGGAACTCACCGAGATTGCAGAGCAGGCAA AGAGGAGAGCCGAGGTCGCGAGGCTTAGGGAGCTTCTGACTCTCAAGGGCCACGTCGAGTCGGTGGTGAAGCTCAAGGGGTTGGACATTGACACCATCCA ACAGCATTACACCGTGTAA
AA sequence Show only first row Show all	>Lus10013483 pacid=23155116 polypeptide=Lus10013483 locus=Lus10013483.g ID=Lus10013483.BGIv1.0 annot-version=v1.0 MANNSSLEDIKNETVDLEKIPVEEVFQQLKCSKEGLSSEEGANRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFV GIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRHPGQEVF SGSTCKQGELEAVVIATGVHTFFGKAAHLVDSTNQVGHFQQVLTAIGNFCIVSIAIGMVIEIIVMYPIQHREYRKGIDNLLVLLIGGIPIAMPTVLSVTM ANCGPNILAQGGITKQERVFKKSISFRSIPWTKELPSLTLMLMVTGTVHVKELLSRDDLRKKVHSVIEKFAERGLRSLGVARQVVPEKTKESAGGPWEFV GLLNLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSAALLGEHKDASIASIPVEELIEKADGFAGVFPEHKYEIVKKLQELK HIVGMTGDGVNDAPALKKADIGIAVADATDAARGVSDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWKFDFSPFMVLIIA ILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVALGSYLALMTVIFFWIMHKTDFFPDRFGVRPIKGSEDEMMSALYLQVSIVSQALIFVTRSRSWSFL ERPGLLLLFAFGVAQLVATLIAVYANWGFARIQGIGWGWAGVVWLYSIVFYFPLDIMKFFIRYVLSGKAWTNMLENKTAFTTKKDYGKEEREAQWALAQR TLHGLQPPQESSQGGIFNEKSSYRELTEIAEQAKRRAEVARLRELLTLKGHVESVVKLKGLDIDTIQQHYTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	0	1
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	1.7	0.9287
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	3.2	0.8894
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10007357 [exp]	3.5	0.8486
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	5.7	0.8676
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	6.3	0.8603
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	9.2	0.8410
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016519 [exp]	9.5	0.8429
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	11.2	0.8536
					Lus10013093 [exp]	11.9	0.8005
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014568 [exp]	13.5	0.8344

Compare expression of checked genes

Lus10013483 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.