Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68040 56 / 2e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G15125 40 / 9e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007950 [exp] 145 / 8e-47 AT1G68040 75 / 5e-17 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136200 [exp] 96 / 4e-25 AT1G68040 312 / 1e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136300 [exp] 62 / 1e-12 AT1G68040 379 / 7e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016112 [exp] 46 / 5e-07 AT1G68040 319 / 2e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016102 [exp] 45 / 8e-07 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03492 [flax] [poplar] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013484 pacid=23155149 polypeptide=Lus10013484 locus=Lus10013484.g ID=Lus10013484.BGIv1.0 annot-version=v1.0 ATGCCACCGCCGGGAGAATTCACAACCGCCATGGCCCAAAACGGCCAGTTCACCGTGGATGCGATGGGGATGACGAATCCTGCGCCGTGGCTGACGGAAG GAGTCCACGTGGACATGGTGGAATACACGAGCCACATAAGAGACGCCATGGAAGGAATGTTCCTCTCCCATTTCCATCCTAATGTAGTCGGAGCTCTCTT CGACCGGCTCGCCGTCAAGCTGTTGGAGCCGTCGGAGGAAATGGAGCTGCCGATCTACTCTATTTTACACCGCAATGGTTAG
AA sequence Show only first row Show all	>Lus10013484 pacid=23155149 polypeptide=Lus10013484 locus=Lus10013484.g ID=Lus10013484.BGIv1.0 annot-version=v1.0 MPPPGEFTTAMAQNGQFTVDAMGMTNPAPWLTEGVHVDMVEYTSHIRDAMEGMFLSHFHPNVVGALFDRLAVKLLEPSEEMELPIYSILHRNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10013484 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	5.7	0.8084
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	9.8	0.7245
AT3G61490			Pectin lyase-like superfamily ...		Lus10036383 [exp]	9.8	0.7169
AT1G11920			Pectin lyase-like superfamily ...		Lus10018429 [exp]	13.2	0.7029
					Lus10009729 [exp]	14.0	0.7020
					Lus10015218 [exp]	17.6	0.7094
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	19.6	0.7111
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10032438 [exp]	20.2	0.5699
AT3G12620			Protein phosphatase 2C family ...		Lus10003993 [exp]	28.1	0.6782
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	33.3	0.6720

Compare expression of checked genes

Lus10013484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.