Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01190 89 / 9e-19 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007952 [exp] 414 / 1e-139 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G124700 [exp] 137 / 4e-35 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 123 / 2e-30 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 50 / 2e-06 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.017G119100 [exp] 45 / 7e-05 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013486 pacid=23155097 polypeptide=Lus10013486 locus=Lus10013486.g ID=Lus10013486.BGIv1.0 annot-version=v1.0 ATGATGATGGAAACGACGACTTCGTCCTTTGGATCCACTTCTTCCTCGCCTTCGTTGGCGAATTTGCCTCCGATCAGAGTGCATGTTGCTCAGGAGCAAC AGAAAGCTGGAATGGAAGAGCAGTTTGCTCAGATTAGCCTAGGTGGTGGCGTGCAGAAGCCAGATGAGGGGTTAATGCCAATTTCATCCCCACCACCAAT GCCTGTTCCGATCACTGATGATGATAGATCCGATCAAGGCGTTCCTGTAGTGTACAGAAGGCCTCTGACAGCTCAGTCTCAGCTACAGATGCCTCCTCCA CAGACACAGCAACAAAAATCTAACAGTGGTGGTGGTGGTGGTGGTGATATAGCTTCTCCTGATTCCGTTTCAAGTGATAGTAGCTTTAGCAATGGCATGA ATAGACAAAAGCAGCCTGGAATCAGTCAAGAACAGGTCATGCAAGTTCCTCCTGGAGCAAACAGGGTTGTTAGTGTTACCCCTAACCTTGTTGCACCAAA CAGCCGTGTTCAGGTTCAAGATTCTGGAAATCTATTGCCACCGCAATTTGAACATCATCATCAACAGCAGCAGCAATTTGTACAGGCTGGTGCTCAGTAC ATCCAGCATCACCCTTCCGGCGGAGTACCAATGCAAACTTATTACCCTGTGTACACTCACCAGCAGCAGCAGCAGCAGCAGCATCCGCACCAGATGGATC AACAATACCCAGTCTACTATGTCCAAACAAGACATCCCCCAGCCTACACCATGCCTGTGCAAATGCACCAATCCAGTGCTCCTGAACATGCAAAGAACAT CCCCTCTAGCCCGTCTCAACCTCCTCCCGTCAGTACTCCCGTCCCGAAACCTGAAATCCTCCCAACAGGAATGTACAGAACAACGAATGCTGTAGGAACG CCGCAGCTAGTGACATTGTCTTCTGGTCAGCTTCATCACCATCAACAGCAACAGCAGCAACATCAGCAACATCAGCAGTTTGTGGGTTATTCACAAGTTC AACATCATCCATCCCAGTCTGTGGCACCTCCCGGCAATCCGAACTATGGTTACGAGTTTGTTGATCCTAGTCATGGTCAGCTATACTACACTCAGCCCCC AATGCCTTCACAGTACCAAACGATGACATCAGGTGCTGTATTATCAGAAGGTTCTGCTCAGCTTCCCACCGACCCCATCAAGCGAACTTCATAA
AA sequence Show only first row Show all	>Lus10013486 pacid=23155097 polypeptide=Lus10013486 locus=Lus10013486.g ID=Lus10013486.BGIv1.0 annot-version=v1.0 MMMETTTSSFGSTSSSPSLANLPPIRVHVAQEQQKAGMEEQFAQISLGGGVQKPDEGLMPISSPPPMPVPITDDDRSDQGVPVVYRRPLTAQSQLQMPPP QTQQQKSNSGGGGGGDIASPDSVSSDSSFSNGMNRQKQPGISQEQVMQVPPGANRVVSVTPNLVAPNSRVQVQDSGNLLPPQFEHHHQQQQQFVQAGAQY IQHHPSGGVPMQTYYPVYTHQQQQQQQHPHQMDQQYPVYYVQTRHPPAYTMPVQMHQSSAPEHAKNIPSSPSQPPPVSTPVPKPEILPTGMYRTTNAVGT PQLVTLSSGQLHHHQQQQQQHQQHQQFVGYSQVQHHPSQSVAPPGNPNYGYEFVDPSHGQLYYTQPPMPSQYQTMTSGAVLSEGSAQLPTDPIKRTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	0	1
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10007952 [exp]	1.0	0.9326
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10013850 [exp]	6.6	0.8592
AT1G78310			VQ motif-containing protein (....		Lus10010347 [exp]	6.6	0.8398
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	8.3	0.8205
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	11.1	0.8568
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	12.2	0.8569
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	12.6	0.8563
AT5G46170			F-box family protein (.1)		Lus10038511 [exp]	14.5	0.7909
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	15.1	0.8555
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	15.9	0.8271

Compare expression of checked genes

Lus10013486 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.