Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15140 245 / 7e-83 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007955 [exp] 280 / 5e-99 AT1G15140 236 / 2e-79 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10035265 [exp] 221 / 3e-68 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10034633 [exp] 194 / 1e-62 AT1G15140 316 / 3e-108 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126700 [exp] 241 / 1e-81 AT1G15140 395 / 9e-140 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Potri.010G116500 [exp] 218 / 7e-72 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013488 pacid=23155078 polypeptide=Lus10013488 locus=Lus10013488.g ID=Lus10013488.BGIv1.0 annot-version=v1.0 ATGGGGAAAGGATTCGGAATCAATCAAATTGATCCGCCAGAGAAGTACTCTACCGTTCTGATTTTCGCTACCGGCTCTGGAATCAGTCCAATTCGATCTC TAATTGAGACAGGGTTTAGTGCTGACCGAAGATCGGATGTGAGGCTTTACTATGGAGCTAGAAACCTTAAGAGGATGGCTTACCAGGATAGGTTCAAAGA ATGGGAGTCGTCTGGTGTTAAGATTATTCCAGTACTATCGCAACCAGATGGTAGCTGGAAGGGTGAAGCTGGCTATGTACAGGCTGCTTTCGCTAGCGCC ACGCAGATATCCAGCCCAGCAGGCACAGGTGCTGTGCTTTGTGGGCAGAAACAGATGGCAGAGGAGGTGACATCAATTCTTTTAGCAGAGGGAGTCTCCA CAGACAGAATACTAAAGAACTTCTGA
AA sequence Show only first row Show all	>Lus10013488 pacid=23155078 polypeptide=Lus10013488 locus=Lus10013488.g ID=Lus10013488.BGIv1.0 annot-version=v1.0 MGKGFGINQIDPPEKYSTVLIFATGSGISPIRSLIETGFSADRRSDVRLYYGARNLKRMAYQDRFKEWESSGVKIIPVLSQPDGSWKGEAGYVQAAFASA TQISSPAGTGAVLCGQKQMAEEVTSILLAEGVSTDRILKNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10013488 [exp]	0	1
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	2.2	0.8471
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	3.6	0.9048
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	6.2	0.8753
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	6.9	0.8271
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	9.6	0.8561
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	14.8	0.8312
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	14.8	0.8326
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	16.4	0.8075
AT5G64230			unknown protein		Lus10010617 [exp]	17.3	0.8118
AT5G15140			Galactose mutarotase-like supe...		Lus10007251 [exp]	17.7	0.8391

Compare expression of checked genes

Lus10013488 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.