Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03280 99 / 1e-26 unknown protein AT5G17350 92 / 2e-23 unknown protein AT4G37240 51 / 4e-08 unknown protein AT2G23690 49 / 2e-07 unknown protein AT5G12340 47 / 2e-06 unknown protein AT5G66580 45 / 4e-06 unknown protein AT1G76600 45 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007960 [exp] 248 / 8e-85 AT3G03280 109 / 3e-30 unknown protein Lus10035268 [exp] 217 / 9e-73 AT5G17350 116 / 4e-33 unknown protein Lus10034636 [exp] 147 / 2e-45 AT5G17350 92 / 5e-24 unknown protein Lus10017620 [exp] 75 / 4e-17 AT5G17350 83 / 2e-20 unknown protein Lus10010014 [exp] 56 / 2e-09 AT4G02090 127 / 2e-36 unknown protein Lus10012442 [exp] 47 / 2e-06 AT1G76600 152 / 2e-46 unknown protein Lus10019659 [exp] 45 / 4e-06 AT5G66580 141 / 4e-44 unknown protein Lus10016785 [exp] 43 / 3e-05 AT2G23690 138 / 4e-42 unknown protein Lus10033761 [exp] 42 / 6e-05 AT1G76600 150 / 1e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116000 [exp] 211 / 2e-70 AT3G03280 131 / 4e-39 unknown protein Potri.008G127200 [exp] 208 / 3e-69 AT3G03280 127 / 2e-37 unknown protein Potri.004G094000 [exp] 144 / 4e-44 AT3G03280 143 / 1e-43 unknown protein Potri.017G121200 [exp] 137 / 4e-41 AT3G03280 145 / 7e-45 unknown protein Potri.012G045600 [exp] 68 / 1e-14 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 66 / 6e-14 AT1G18290 122 / 1e-35 unknown protein Potri.004G149800 [exp] 62 / 2e-12 AT5G66580 91 / 7e-24 unknown protein Potri.006G105600 [exp] 61 / 1e-11 AT3G03280 63 / 9e-13 unknown protein Potri.006G105500 [exp] 59 / 3e-11 AT3G03280 65 / 2e-13 unknown protein Potri.002G196900 [exp] 56 / 8e-10 AT4G02090 92 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013490 pacid=23155145 polypeptide=Lus10013490 locus=Lus10013490.g ID=Lus10013490.BGIv1.0 annot-version=v1.0 ATGGGAAATTACGTGTCCTGCACACTGGCGACTCCGCTGATCAAGTCCGGCAGGGCGGCGAGGGTAGTGTTCCCCGGCGGCGAGGTACGGCAGTTTAGGG ATCAGACGATCAAGGCGGCGGAGATCATGTTCGATTGCCCCAATTTCTTCCTCTGTAACTCCCAGTCGCTCCACATCGGCCGCAGATTCTCACCTCTATC GGCCGACGAGGAGCTGGAGCTCGGAAACGTCTACCTCATGTTCCCGATCAAGCGGGCTAGCTCGATCGTGACGGCTGCTGACATGGCTGTGTTCTTTCTT GCGGCCAATTCCGCCGCCAAGCGGATCGCCGGCGGGAAAGGAGGAGGAGGAGGTGGTGGTGATGGGAGTCAGGGATCGGAACAGGAAGTGAGCGGCGGAG GGGTGAAGAGGTTGGAGGAAATGGCGGAGGAGATGGAGATTCCGGCGGAGTATAAGTACAGGATGTCGGTTTGCCGGTCGAGGAAGCCGATGTTGGAGAC GATTCGAGAAGAGCCTGCGGCGCCGGTTGTTTTTTCCCGGTGA
AA sequence Show only first row Show all	>Lus10013490 pacid=23155145 polypeptide=Lus10013490 locus=Lus10013490.g ID=Lus10013490.BGIv1.0 annot-version=v1.0 MGNYVSCTLATPLIKSGRAARVVFPGGEVRQFRDQTIKAAEIMFDCPNFFLCNSQSLHIGRRFSPLSADEELELGNVYLMFPIKRASSIVTAADMAVFFL AANSAAKRIAGGKGGGGGGGDGSQGSEQEVSGGGVKRLEEMAEEMEIPAEYKYRMSVCRSRKPMLETIREEPAAPVVFSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03280			unknown protein		Lus10013490 [exp]	0	1
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	1.4	0.9638
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	1.4	0.9595
AT5G04340	C2H2ZnF	ZAT6, CZF2, C2H...	COLD INDUCED ZINC FINGER PROTE...		Lus10004316 [exp]	2.4	0.9591
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	2.8	0.9403
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	2.8	0.9591
AT3G21570			unknown protein		Lus10034002 [exp]	4.1	0.9234
AT3G03280			unknown protein		Lus10007960 [exp]	4.2	0.9533
AT4G29780			unknown protein		Lus10027622 [exp]	4.5	0.9579
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	5.2	0.9364
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	5.9	0.9451

Compare expression of checked genes

Lus10013490 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.