Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13240 275 / 4e-90 transcription regulators (.1) AT2G01275 213 / 2e-65 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 147 / 2e-40 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G47550 124 / 3e-32 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT2G02960 118 / 5e-30 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT5G62460 114 / 3e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 112 / 8e-28 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G02610 102 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 94 / 7e-22 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 54 / 2e-07 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007961 [exp] 386 / 2e-131 AT5G13240 260 / 2e-86 transcription regulators (.1) Lus10034640 [exp] 283 / 3e-92 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035271 [exp] 275 / 3e-89 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10004058 [exp] 222 / 7e-69 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 186 / 4e-55 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030472 [exp] 132 / 1e-34 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 131 / 3e-34 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034638 [exp] 125 / 5e-34 AT5G13240 110 / 4e-31 transcription regulators (.1) Lus10021670 [exp] 123 / 2e-31 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115800 [exp] 296 / 2e-98 AT5G13240 335 / 4e-118 transcription regulators (.1) Potri.010G115600 [exp] 254 / 2e-81 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 253 / 9e-81 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 224 / 9e-70 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 207 / 9e-64 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 139 / 3e-37 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 135 / 4e-36 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 118 / 4e-30 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 114 / 8e-29 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.014G121900 [exp] 108 / 7e-27 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09174 [flax] [poplar] Maf1 Maf1 regulator CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10013491 pacid=23155153 polypeptide=Lus10013491 locus=Lus10013491.g ID=Lus10013491.BGIv1.0 annot-version=v1.0 ATGGGGGATCATTTCGTGGTGTTGGTGGACCGGCTGATAACCGAATCGACGCTCGAAGCAGCAATCGAAAGCCGGATTCGTTCCATGCAAGCCGCTGCAT CATCCGGCGTGGATAATCTGGAAGTTGAGGAGAAATCCTGCCAGAATGCGGATTCTTTTGATGACGTGTCAGCTACTCCCATGAAGATTGTTGAATGCAG GATATGCCAGGATGAAGATTTTGATTCCAACATGGAGGCCCCTTGCTCTTGCTGTGGCAGCCTCAAGCATGCTCACAGGAGGTGTGTACAAAAGTGGTGC AATGAGAAAGGCAACACCACCTGTGAAATATGCCACCAGCAATTCAAGCCTGGTTATACAGCTCCACCACCGTTGTTCCGTATCGGGCGTATACCGATAA ACCTGAGAGGAGGAAACCGGGATCTGTCGAGAAGGGATACGCGTGTTTTCGCGGTGGTATCATCAACAGAACACAATCTTGCTAGTAGTCCTGACTATGA TGATGAACATTCAGCCTTTGGTCCACAAAACCTCATCTGCTGTCGCTCGATCGCTATACTCATCATGATAGTGTTGCTTCTACGGCACATGCTTCCTCTG TTACTGTCAGGAACGGTCCACATATCCATTGCACTCTTGTTGTTGTTATTCCTACGAGTGGCCGGAATCGTTCTTCCGATCTACGTTCTGGTTAAATCAT TGACTGTTCTCCAGCAACGTCGCGAGCAACAACACCAGCAAATGCAAATGCAGGACATCCTTTCGTCAGACGAAGATCCTGACGAGGAGGATCAATCGGC CGTGCGGCTCGAGTCGCATAAACTGATCCGAAGCGATATCATGAAGTTCTTAGAGTACACTCCGCTTGAACGGATTGATGATTTCCTTAACCATTTGAAT CTCGGAGAGTCCACGATTAAAGGTTCCCTTGAGGCTTACTCTTGCAAGCACGCTGGATCTGACAAAAAGCTCTCCTTCAGTTTGGAGAATGAGCTTTTTC CTCTGACAAGATCAGTCGTGTTTCAGATTCTTGATTACCTCGGAAAATCTTCTGATAGTGATTCTTCCTCGCCTCCTGAATACCTGTTGAGCAGATCCAG CCGGAAGACACTGATTTACCTTATTCTGACACTCTCTCATATGTATCCTGACTATGACTTCAGCGCCATGAAAGCTCATCAGTTCTTCACAAAGGAAACT TGGGAGACATTTAAGCAGTTCTTTGATATCCACATGATGGGAGCATCAAAGGAATGGAGGGAGGGAGGTGGAGATACTTCATTACTGGAATCAATATACA GAGCTTTAGATGAGGTTGTAAATCTGTCCGAGTGCGAAATCTACAGTTACGATCCGGACTCCGACGTGAACCCGTTTCTGGAGAGGGGTGCAATCTGGTC TATCAGCTTCTTCTTCTACAACAAGAAGCTAAAGCGGGTCGTAAGCTTCTGTTGCTGCTGCGTAAGCAACTTGATCGGCATTGATGGCTTGAGTAACAGC GACGATGATGGAGAAATATTCGATGACATGGACATGTAA
AA sequence Show only first row Show all	>Lus10013491 pacid=23155153 polypeptide=Lus10013491 locus=Lus10013491.g ID=Lus10013491.BGIv1.0 annot-version=v1.0 MGDHFVVLVDRLITESTLEAAIESRIRSMQAAASSGVDNLEVEEKSCQNADSFDDVSATPMKIVECRICQDEDFDSNMEAPCSCCGSLKHAHRRCVQKWC NEKGNTTCEICHQQFKPGYTAPPPLFRIGRIPINLRGGNRDLSRRDTRVFAVVSSTEHNLASSPDYDDEHSAFGPQNLICCRSIAILIMIVLLLRHMLPL LLSGTVHISIALLLLLFLRVAGIVLPIYVLVKSLTVLQQRREQQHQQMQMQDILSSDEDPDEEDQSAVRLESHKLIRSDIMKFLEYTPLERIDDFLNHLN LGESTIKGSLEAYSCKHAGSDKKLSFSLENELFPLTRSVVFQILDYLGKSSDSDSSSPPEYLLSRSSRKTLIYLILTLSHMYPDYDFSAMKAHQFFTKET WETFKQFFDIHMMGASKEWREGGGDTSLLESIYRALDEVVNLSECEIYSYDPDSDVNPFLERGAIWSISFFFYNKKLKRVVSFCCCCVSNLIGIDGLSNS DDDGEIFDDMDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13240			transcription regulators (.1)		Lus10013491 [exp]	0	1
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	7.2	0.9208
AT2G30270			Protein of unknown function (D...		Lus10042235 [exp]	8.9	0.8969
AT1G21370			unknown protein		Lus10042793 [exp]	9.7	0.9068
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	10.8	0.9172
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	13.2	0.9042
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	13.3	0.9136
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	14.7	0.8944
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	14.8	0.8935
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	15.0	0.8868
AT4G12760			unknown protein		Lus10001181 [exp]	18.9	0.8977

Compare expression of checked genes

Lus10013491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.