Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71110 570 / 0 unknown protein AT2G12400 374 / 1e-123 unknown protein AT2G25270 368 / 3e-121 unknown protein AT1G80540 296 / 2e-93 unknown protein AT5G67550 71 / 8e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007962 [exp] 869 / 0 AT1G71110 578 / 0.0 unknown protein Lus10034641 [exp] 611 / 0 AT1G71110 587 / 0.0 unknown protein Lus10035272 [exp] 383 / 1e-127 AT1G71110 503 / 2e-174 unknown protein Lus10001945 [exp] 383 / 5e-127 AT2G25270 650 / 0.0 unknown protein Lus10008028 [exp] 374 / 8e-124 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 362 / 3e-119 AT2G12400 616 / 0.0 unknown protein Lus10001929 [exp] 258 / 1e-78 AT2G25270 457 / 3e-156 unknown protein Lus10014341 [exp] 241 / 4e-73 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 235 / 4e-71 AT2G25270 328 / 4e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115500 [exp] 659 / 0 AT1G71110 646 / 0.0 unknown protein Potri.018G023200 [exp] 391 / 3e-130 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 382 / 1e-126 AT2G25270 590 / 0.0 unknown protein Potri.006G060600 [exp] 380 / 6e-126 AT2G12400 579 / 0.0 unknown protein Potri.018G120200 [exp] 378 / 3e-125 AT2G12400 596 / 0.0 unknown protein Potri.007G132601 [exp] 151 / 1e-39 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 143 / 1e-36 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013492 pacid=23155158 polypeptide=Lus10013492 locus=Lus10013492.g ID=Lus10013492.BGIv1.0 annot-version=v1.0 ATGGCGAGATTCCGATGGTTTTGGATCATGTGGGCTGCTGCTGTTTGCTTCATTTCAGCTCAGAGTGAACACACAGTCACCTCCTCCAAGCTTTTGTTAG GGCAAGTGAATTTGGGATCATGGAGGAAGGGGATATCTGAAGCTGCTACTACTTCTACTGCAGAAGCACCTGAGCCGTCTAGCTATACTACTCTTGTGTT GGCTGTTGATAGGACTAATCGCCCTGATATACTTAACCGGTTTAAGCACTATACAGGAGGTTGGGATATCACCAATCGCCATTACTGGGCTTCTGTTGGA TTCACTGGTGCTTCCGGTTTCGTGTTGGCAATCTTGTGGTTCTTCTCCTTCCCTTTTGCTGTTGCAGTCCACCATTGGTGTGGATGGAAAGTGAAGATTC AAGACAAAGGGCTGAGAGCTCAAAGGATATGCCTCATATTGCTGATAGTGTTCACATGTGCTGCAGCGATCGGGTGCATTCTTCTTTCAGTCGGCCAGGG TGAATTCAACGGAGAAGCGAAGAACACTTTGAGATATGTTGTAAACCAATCGGATTACACGGTTCAAACCTTGAGAAATGTGACCGAATATCTCTCCCTC GCCAAGACCATGAAAGTGGCTCAAGTTCTTCTCCCTTCTAACGTCATGGATGACATTGGCAAGTTGAACGTTGATCTGAACGCTGCAACGAACAAGCTCG AGGAGAAGACCAGCGAGAATTCCGAAAAGATCGCCACTGTGTTCACTGCAGTCCGTTCTGCGCTAATTGCTGTTGCTGCAGTAATGCTTGTCCTGGCCGT GGTTGGTTTTGTGCTTTCTGTCCTTGGTCTTCAGCATGCTATTTACATATTCGTGCTGAGCGGGTGGTTACTCGTCTCAATAACGTTCATTCTCTGTGGA GTATTCATCATCTTTCACAATGCAATTACAGACACGTGCACATCCATGGATGAATGGGTTCAGAATCCTCAGTCAGCATCAGCACTTAGCAACATCCTCC CCTGTGTCGACCAGCGCACCACGAACAAGACGCTCATCCAAAGTAAAGAAGTCGTCAACGACATCGTGACCATGGTCAACACGTACATATACACCTTCGC GAATGCAAACCCGTCCCCTACTGAAGTATTTAACTACTACAACCAGTCCGGACCTCTGATGCCTCCGATGTGCTTACCGTTCGACTCGCAGCTTCACAAT CGACAGTGCGCTTCCCAAGAAGTCTCCTTGGCAAATGCCTCCACGGTGTGGGAAAGCTATGTATGCCAAGTTTCATCATCTGGATACTGCACAACTGTTG GAAGAATCAAACCTGATGTTTACAGCCAGTTGGTGGCAGCTGTTACTGAGACCTACGCGCTCGAGTACTACACTCCGGTCTTGCTCAGCTTCCAGGACTG CAAATTCGTCAGGGACACGTTCCGAGAAATCACCTCGAAATATTGCCCTCCGTTGGAGCGTTACCTCCAGCTCATAAATGTGGGACTGGGCTTGATCTCG GTGGGAGTTCTGCTGTGTCTTGTTCTGTGGATACTCTATGCAAACCGCCCCCAAAAGGAGGAAGCGTTTGCCAAGAATAAGAACACCGGGAGTACTCCTC CTCGTTCTCGGAACGACTCCGAGGATAGCATGCAAATACAGGTTGTTAGATAG
AA sequence Show only first row Show all	>Lus10013492 pacid=23155158 polypeptide=Lus10013492 locus=Lus10013492.g ID=Lus10013492.BGIv1.0 annot-version=v1.0 MARFRWFWIMWAAAVCFISAQSEHTVTSSKLLLGQVNLGSWRKGISEAATTSTAEAPEPSSYTTLVLAVDRTNRPDILNRFKHYTGGWDITNRHYWASVG FTGASGFVLAILWFFSFPFAVAVHHWCGWKVKIQDKGLRAQRICLILLIVFTCAAAIGCILLSVGQGEFNGEAKNTLRYVVNQSDYTVQTLRNVTEYLSL AKTMKVAQVLLPSNVMDDIGKLNVDLNAATNKLEEKTSENSEKIATVFTAVRSALIAVAAVMLVLAVVGFVLSVLGLQHAIYIFVLSGWLLVSITFILCG VFIIFHNAITDTCTSMDEWVQNPQSASALSNILPCVDQRTTNKTLIQSKEVVNDIVTMVNTYIYTFANANPSPTEVFNYYNQSGPLMPPMCLPFDSQLHN RQCASQEVSLANASTVWESYVCQVSSSGYCTTVGRIKPDVYSQLVAAVTETYALEYYTPVLLSFQDCKFVRDTFREITSKYCPPLERYLQLINVGLGLIS VGVLLCLVLWILYANRPQKEEAFAKNKNTGSTPPRSRNDSEDSMQIQVVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71110			unknown protein		Lus10013492 [exp]	0	1
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	2.4	0.9164
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10022466 [exp]	4.2	0.8966
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	5.5	0.9110
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10023058 [exp]	7.9	0.8561
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	8.5	0.9014
AT5G62570			Calmodulin binding protein-lik...		Lus10043463 [exp]	8.5	0.9047
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	9.5	0.8954
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	13.0	0.8910
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10035907 [exp]	16.6	0.8525
AT4G31410			Protein of unknown function (D...		Lus10020151 [exp]	18.8	0.8815

Compare expression of checked genes

Lus10013492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.