Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08160 592 / 0 ATPK3 serine/threonine protein kinase 3 (.1.2) AT2G32850 112 / 9e-27 Protein kinase superfamily protein (.1.2) AT4G04710 66 / 1e-11 CPK22 calcium-dependent protein kinase 22 (.1) AT1G12680 61 / 4e-10 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT2G25880 60 / 5e-10 ATAUR2 ataurora2 (.1.2) AT3G29160 60 / 6e-10 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT3G01090 60 / 1e-09 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G10540 58 / 4e-09 3-phosphoinositide-dependent protein kinase (.1) AT5G57630 58 / 4e-09 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) AT1G18890 58 / 4e-09 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007963 [exp] 681 / 0 AT5G08160 597 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10034642 [exp] 500 / 7e-179 AT5G08160 499 / 4e-179 serine/threonine protein kinase 3 (.1.2) Lus10035273 [exp] 244 / 2e-79 AT5G08160 238 / 7e-78 serine/threonine protein kinase 3 (.1.2) Lus10003916 [exp] 115 / 5e-28 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037472 [exp] 113 / 4e-27 AT2G32850 660 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 65 / 5e-11 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10034860 [exp] 64 / 7e-11 AT3G10660 254 / 6e-77 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10033400 [exp] 60 / 1e-09 AT3G10660 257 / 6e-78 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10042816 [exp] 60 / 2e-09 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057300 [exp] 619 / 0 AT5G08160 610 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.015G055200 [exp] 615 / 0 AT5G08160 600 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.001G228100 [exp] 115 / 5e-28 AT2G32850 717 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G247400 [exp] 66 / 2e-11 AT3G10660 253 / 2e-76 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.013G046100 [exp] 60 / 4e-10 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.006G062800 [exp] 59 / 2e-09 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.016G054600 [exp] 59 / 2e-09 AT3G57530 864 / 0.0 calcium-dependent protein kinase 32 (.1) Potri.019G018100 [exp] 58 / 2e-09 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.004G115900 [exp] 59 / 3e-09 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.007G112400 [exp] 59 / 3e-09 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013493 pacid=23155062 polypeptide=Lus10013493 locus=Lus10013493.g ID=Lus10013493.BGIv1.0 annot-version=v1.0 ATGGGCTGCAATTTCTCCGGCCTCAACGCTCTGTACGACGCCGTGAACGGCGGCGGAGATGTTTGGATCAACGAGAACCGGTTCAGAATCGTTAGGCAGC TCGGCGAAGGTGGGTTCGCCTTCGTTTATCTTGTCAAGGAGGTCTTCCCTGACAACTCTTCCTCCGGCGCCGGCCTCGCCGCCAAAGTCAATGACAAATC TCATCTCTCCGGGGTAGTTTGGAAAGCTCTCTCTATGTGCATTGCGATCTGCGCAAATGTTGGGTTGAAAGGATTGATCTTGTGGGGTGCAGATGATGGA ACTTATGCGATGAAGAAGGTTCTGATTCAGAACAATGAGCAGTTGGAGTTGGTTCGAGAAGAGATTCGAGTTTCGTCGTTGTTTAGCCACCCGAATCTTC TTCCTTTGCTGGATCATGCCATCATTTCTGTTAAGACTACTCAAGAAGTATCATCCTCGAACCATGAAGCGTATTTACTATTTCCAGTGCACTTGGACGG AACCTTATTGGACAATTCGAAAGCCATGATGGCGAAGAAAGAGTTCTTTTCGACCTCGGATGTTCTTCAAATATTTCGACAGCTTTGTGCAGGATTGAAG CACATGCACAATCTCGAGCCACCATACGCACACAACGATGTGAAACCTGGAAATGTGCTTATAACGCATAGGAAAGGAAAGTCACCCCTTGCCATACTGA TGGATTTCGGCAGTGCTCGGCCTGCTAGAAAGCAAATCCGTTCGCGAACAGAGGCGCTTCAACTGCAGGAATGGGCAGCAGAGCATTGTTCAGCGCCTTT TAGAGCTCCCGAGTTCTGGGATTGCTCAAGTCATGCCGATATCGATGAAAGGACCGATGTCTGGTCTCTGGGATGCACACTTTATGCCATCATGTACGGC GTATCTCCATTTGAGTATGCTCTTGGAGAATCCGGAGGGAGCCTACAGCTAGCCATTCTAAACGCGCAGATAAAATGGCCAGCCGGACCGAAGCCTCCAT ACCCAGAAGCCTTGCACCAATTCATCACGTGGATGCTTCAGCCGCAAGGAACAGTTCGTCCCCGCATTGACGACATCATCATTCACGTCGACAAGTTGAT TTCCAAGTTTTCGAGCTAA
AA sequence Show only first row Show all	>Lus10013493 pacid=23155062 polypeptide=Lus10013493 locus=Lus10013493.g ID=Lus10013493.BGIv1.0 annot-version=v1.0 MGCNFSGLNALYDAVNGGGDVWINENRFRIVRQLGEGGFAFVYLVKEVFPDNSSSGAGLAAKVNDKSHLSGVVWKALSMCIAICANVGLKGLILWGADDG TYAMKKVLIQNNEQLELVREEIRVSSLFSHPNLLPLLDHAIISVKTTQEVSSSNHEAYLLFPVHLDGTLLDNSKAMMAKKEFFSTSDVLQIFRQLCAGLK HMHNLEPPYAHNDVKPGNVLITHRKGKSPLAILMDFGSARPARKQIRSRTEALQLQEWAAEHCSAPFRAPEFWDCSSHADIDERTDVWSLGCTLYAIMYG VSPFEYALGESGGSLQLAILNAQIKWPAGPKPPYPEALHQFITWMLQPQGTVRPRIDDIIIHVDKLISKFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	0	1
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	3.2	0.8578
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	4.5	0.8342
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	5.5	0.8066
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	6.3	0.8134
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10033122 [exp]	6.5	0.7917
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	7.1	0.8515
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	8.1	0.8419
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10025339 [exp]	11.2	0.7786
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	12.8	0.7898
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10030323 [exp]	13.6	0.8370

Compare expression of checked genes

Lus10013493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.