Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13580 332 / 3e-114 LOH3, LAG13 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) AT3G25540 296 / 4e-100 LAG1 LONGEVITY ASSURANCE GENE 1, TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G26200 290 / 1e-97 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT3G19260 213 / 2e-67 LOH2, LAG1 HOMOLOG 2, LAG1 HOMO, LAG1HOMOLOG2 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007964 [exp] 479 / 5e-172 AT1G13580 383 / 3e-134 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10029096 [exp] 330 / 3e-113 AT1G13580 487 / 2e-175 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030571 [exp] 314 / 1e-106 AT1G13580 491 / 2e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10013063 [exp] 312 / 2e-106 AT1G13580 469 / 3e-168 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10030918 [exp] 313 / 3e-106 AT1G13580 490 / 4e-176 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Lus10014055 [exp] 194 / 4e-60 AT3G19260 316 / 2e-108 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Lus10019859 [exp] 191 / 7e-59 AT3G19260 343 / 7e-119 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G055000 [exp] 341 / 2e-117 AT1G13580 378 / 3e-132 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.010G134700 [exp] 334 / 6e-115 AT1G13580 444 / 1e-158 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.008G113900 [exp] 329 / 4e-113 AT1G13580 438 / 4e-156 LAG One Homologue 3, LAG1 longevity assurance homolog 3 (.1.2.3) Potri.009G101800 [exp] 223 / 1e-71 AT3G19260 334 / 2e-115 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1) Potri.004G141000 [exp] 220 / 1e-70 AT3G19260 364 / 2e-127 LONGEVITY ASSURANCE GENE1 HOMOLOG 2, LAG1 homologue 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10013494 pacid=23155138 polypeptide=Lus10013494 locus=Lus10013494.g ID=Lus10013494.BGIv1.0 annot-version=v1.0 ATGGAATTTCTTCTTCTCCAGAGTTCGTCGTCGATCGATTGGGACTCCGAATCCTACCCGACGGCCTCCGATTTCCTCGCCGTCCCCTTCTTCGCCGTCT TCTTCCCTCTGCTCCGGCTCTTCCTCGACCGATTCCTGTTTCAGAAAGTGGCTGTACGGCTGATTTTGGGCAAAGGGAAACGGGGGAGCATCAATTTTGC GACTCGAGAGGAGAGGAAGACGATTACCAAGTTCAAGGAATCGGCATGGAAGCTGTTGTATTTCTTCTCGGCGGATGTGTTGGCTCTGTACGTTTCGCAT AGCGAGCCTTGGTTCCTCGATACCAAGTGCTTCTATGTCGGTCCAGGCGATCAAGTCTGGCCCGACCTTAAAACCAAGTTGAAGCTGAAGGGTTTGTACA TGTATGCCTCTGGATTCTACGTGTACTCGACGTTCGCTTTGATGTTCTGGGAGACTCGAAGGTCCGATTTCGCGGTCTCCATGGGTCATCATCTGGCTAC TCTAGCTCTCCTTGTGCTGTCTTACATGGCCAGGTTTCCTCGTGTTGGCGCAATTGTTCTAGCAATACACGATGCGACCGACATGTTCCTAGAGCCGGCA AAGATGGCGAGATACGGCGGATTCGAAGCCCTCTCGAGCATCCTCTTTGCGATATTTGTCCTGGTCTGGACCTCGCTGCGGATTGTATGCTTCCCTTTGT GGATACTAAGAAGTACGAGCACCGAAATCGTCAGGATTCTCGAGGTGGAGAAGCATGGCATTGCCGGACCAGTGTACTACTATCTGTTCAACACTCTGCT CATCTGCTTGCTCATCGTCAACGTGTATTGGTGGAAGTTGATGATCATGATGGTTGTCGAGCAGGTCAAGTCCAAAGGCAAGCTTGGAGATGACATTCGA TCAGATTCTGAAGGTGAAGAAGATGATCATGTTGACTGA
AA sequence Show only first row Show all	>Lus10013494 pacid=23155138 polypeptide=Lus10013494 locus=Lus10013494.g ID=Lus10013494.BGIv1.0 annot-version=v1.0 MEFLLLQSSSSIDWDSESYPTASDFLAVPFFAVFFPLLRLFLDRFLFQKVAVRLILGKGKRGSINFATREERKTITKFKESAWKLLYFFSADVLALYVSH SEPWFLDTKCFYVGPGDQVWPDLKTKLKLKGLYMYASGFYVYSTFALMFWETRRSDFAVSMGHHLATLALLVLSYMARFPRVGAIVLAIHDATDMFLEPA KMARYGGFEALSSILFAIFVLVWTSLRIVCFPLWILRSTSTEIVRILEVEKHGIAGPVYYYLFNTLLICLLIVNVYWWKLMIMMVVEQVKSKGKLGDDIR SDSEGEEDDHVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	0	1
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	1.0	0.9339
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	3.7	0.8701
AT1G03290			unknown protein		Lus10028005 [exp]	4.7	0.9162
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	6.6	0.8924
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	6.9	0.8681
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	7.3	0.8456
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	8.1	0.8962
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	11.5	0.8716
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10028575 [exp]	13.7	0.8561
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	13.7	0.8391

Compare expression of checked genes

Lus10013494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.