Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01190 150 / 9e-38 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 144 / 4e-36 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 104 / 2e-23 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 95 / 2e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 94 / 9e-20 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 92 / 2e-19 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 91 / 2e-18 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 84 / 1e-17 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G35050 86 / 4e-17 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G48240 80 / 4e-17 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007965 [exp] 352 / 3e-115 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 186 / 3e-53 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 138 / 6e-34 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 105 / 1e-23 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 103 / 3e-23 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 94 / 1e-21 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10033570 [exp] 99 / 2e-21 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10017612 [exp] 97 / 9e-21 AT5G16220 185 / 1e-52 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 95 / 2e-20 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053500 [exp] 167 / 6e-44 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 138 / 7e-34 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 135 / 5e-33 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 104 / 8e-24 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 103 / 2e-23 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 94 / 3e-20 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 94 / 6e-20 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 92 / 5e-19 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 91 / 1e-18 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G110000 [exp] 90 / 4e-18 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10013495 pacid=23155067 polypeptide=Lus10013495 locus=Lus10013495.g ID=Lus10013495.BGIv1.0 annot-version=v1.0 ATGGATCCACCACCACCGCCGGCGGCGGCGGGGTTCATCGGCCTCCCTCCTTCTCAGCGCTCTGCAACCCCCGCACACAACCACACCCGCCCACATACAA GCCACGACGACAGCAGAGTAGGAGGAGGAGGGAAGCTCCGGCTGATGTGCAGTTACGGAGGCCACATTATCCCCCGCCCACACGATAAGTCACTCTGCTA CGTCGGCGGCGAGACCCGGATCGTCGTTGTTGACAGGAACTCCGCCACTGTGGCCTCCCTCTCTGCCCGTCTCTCCCGTTCTCTCTCCCTCAACGGCCGG TCATTCACCCTCAAGTACCAGCTCCCGAACGAAGACCTCGACTCATTGGTCTCAGTCGCTTCTGACGAAGACTTGGACAACATGATCGATGAATACGACC GGATCACCCCCCCCCCCCCCGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNGGACTGTTTTTTTTATTCAACAAGCCGGCCACTGCCGCTTCGATGGGCTC CATCAGATCCGAGTCGTGGTTCCTTGACTCGCTCAATTCGGGTTCTCCTTCCGGGTCGGAATCCGGGTTCCTTCTCCTGCCGAGAAACCTGTCGGATACC GCCTTGGTCACCGGGATCGTCGGCGATCATCATCAGCATGGGCATTACCGCAATCAAGGCCATCAGGACTCGCTGATCTTGGTGGAGAGTTTCACTACTT CTGCTGCTGTAACAGAGTCACCGCCGCCGCCGTCTTTCGGATCGACGTCTCCGCCGGAGATGGGGAATAATCTTTTGAATCTGCTGCCGCCGATTCTGGT CAGGGAAGCGGCGGATTCGGTGGGTGGTAATAATCAGGAGCAGCAGTTCCAATTCGGGTATCGTAATCAGCAGCAATTGGTTGGTTCTGCTCAGATTCAA TTGGAGAACATTTCCATTACTGCTACAGCCCCCAATTCGTTCTCTTCTTCGTCATCTTCTGCTGTTCCTCCGCCGCCGCCTCCTGCATCGATTACACCCA CCGGATCCAGCGAGAATCTGAATCGGATGTCGCCGGAGGACGAGGAAGAAACCCGATCGGATCACGGCCGATCAGGTCCGGTTGGTTACCGTAAACCGCC GCTGCCCCTGCCTCATCAGCACAATAATAAAGTTGTTTCGCCGGTTAACAACTCGTACAATCCTCCACCGTCTCCAGATTCAGTTGTCAGCGACAGTAAC AGCATTGCATCGTCAATGGTGTCTTCATCGTCCCTGGCAAAGAACAATGGCCACAACATCTCCGGTGAACTTTCGAAGCAAATCGAGACCAGCAACAATG GAGATCCTAGTAGTAATGTGATTAGTACTATTAGTAATGTTCCAATCCCGATTCAAGACCCATTCTTTGATCAGCATCAGCATCTGCATCAACATCAACA ACAGGTGCATTACTTAAAACCTGGTCCAGGAGGAGGACAGCAGGTGATCTCATCGTCCTACTACGCGCTTCCACCACCATCACCGAATCATCATCATCAC CAACAACCGTATCCGGCTCAGGCTGTTTACGTAATGCCAATGCCAATGCCACAGCTCCATAATCATCAGCAGCCACCAATTTACCCAACTAAAAACAGTG CTGCTCGTCCTTCTGGCGGAAAGGCAGCAGAATTAGGAGTTGTTTACAGTACAAACCACCACCAGCAGCTCTACCATCTCCACCACCAGCAGCAATTCCA TCCTCAACAACAGTATCAAGGTTACTCCCATTTGCAGCATCAGCCAAACGGTGGCGGCTATGAATATAGTGCGCCACCGTCGCCCGATGATCAGCAGCAT CAGATGTTCCATGCACAGCATCAAGGGATCATAGGGACCAATGTGATGCCTCCCACTCCTACTCCTAACCATCACCAGCATCAGAATCAGCATCATCATC ATCATCAGTTGGGTTTGGCAGCATCAGATGGTGCGGGCGGTCCGCATCAGCATCAGCATCAGCAAATTGAAGGCGCATCTCAGCGGCTCCAATAG
AA sequence Show only first row Show all	>Lus10013495 pacid=23155067 polypeptide=Lus10013495 locus=Lus10013495.g ID=Lus10013495.BGIv1.0 annot-version=v1.0 MDPPPPPAAAGFIGLPPSQRSATPAHNHTRPHTSHDDSRVGGGGKLRLMCSYGGHIIPRPHDKSLCYVGGETRIVVVDRNSATVASLSARLSRSLSLNGR SFTLKYQLPNEDLDSLVSVASDEDLDNMIDEYDRITPPPPAXXXXXXXXXGLFFLFNKPATAASMGSIRSESWFLDSLNSGSPSGSESGFLLLPRNLSDT ALVTGIVGDHHQHGHYRNQGHQDSLILVESFTTSAAVTESPPPPSFGSTSPPEMGNNLLNLLPPILVREAADSVGGNNQEQQFQFGYRNQQQLVGSAQIQ LENISITATAPNSFSSSSSSAVPPPPPPASITPTGSSENLNRMSPEDEEETRSDHGRSGPVGYRKPPLPLPHQHNNKVVSPVNNSYNPPPSPDSVVSDSN SIASSMVSSSSLAKNNGHNISGELSKQIETSNNGDPSSNVISTISNVPIPIQDPFFDQHQHLHQHQQQVHYLKPGPGGGQQVISSSYYALPPPSPNHHHH QQPYPAQAVYVMPMPMPQLHNHQQPPIYPTKNSAARPSGGKAAELGVVYSTNHHQQLYHLHHQQQFHPQQQYQGYSHLQHQPNGGGYEYSAPPSPDDQQH QMFHAQHQGIIGTNVMPPTPTPNHHQHQNQHHHHHQLGLAASDGAGGPHQHQHQQIEGASQRLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	0	1
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	2.0	0.7439
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10035008 [exp]	2.4	0.7270
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	3.6	0.7694
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	8.8	0.6866
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	13.6	0.7259
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10024885 [exp]	23.7	0.6892
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	32.3	0.6759
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	39.7	0.6312
AT5G14230			unknown protein		Lus10015811 [exp]	40.8	0.6461
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10005578 [exp]	41.0	0.6719

Compare expression of checked genes

Lus10013495 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.