Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15060 423 / 2e-142 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) AT1G73750 404 / 2e-136 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034107 [exp] 367 / 3e-120 AT1G15060 774 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10043481 [exp] 328 / 4e-105 AT1G15060 762 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10007966 [exp] 349 / 4e-49 AT1G73750 224 / 9e-69 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10000099 [exp] 123 / 2e-31 AT1G15060 331 / 6e-111 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053700 [exp] 454 / 2e-155 AT1G15060 505 / 4e-175 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.008G124400 [exp] 420 / 8e-141 AT1G15060 743 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.010G119700 [exp] 417 / 1e-139 AT1G15060 751 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10013496 pacid=23155131 polypeptide=Lus10013496 locus=Lus10013496.g ID=Lus10013496.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTCCGGCTGCAACCCATTTATGCTGCCGTACCCCCATCTCACCGCCGTCGTCACGTCCCGTCGCCGGAATCCTATCTCTACCACGACCAC GATCCGCCTTCTACCCACCACGGGCTGCGGCGCCGCTTCGAAAAATTTCGGCGGCGCCTGTTGCGGTGGAGGGGAGGAAGGTGGAGAAGAAGCCTGAAAT ATGCACGGCCGACGAGCTTCATTTTGTCGACGTTTACAATTCGGACTGGAAGCTCGCTCTCTGGCGCTACCTCCCTTCTTCCTCTTCCTCCGCCACAAGG AGGAAGCATCCGCTGTTGCTGTTATCCGGAATCGCCACCAATGCCGTCGGATTCGATCTCTGTCCAGAGGTAGGTAAAGCTACGCAGGCTTCGTTTGCTC GTTCAATGGCGGCGGAAGGGTTTGACACATGGGTGCTTGAGCTTCGAGGATCTGGTTTGAGTATTCTGGGAGCTGAGAATGAAATCTCCTCCTTCGTTAA AAGCAGAATAGAACGAAGGAGGCCATCTGAGTTGGTGATGAATCTGCTGGAGAGATTCTCGAGCTTCTTTGATGAAGGTAGAGTTGCAGAAACAGGGGAA TTTTGGTGTATTCAATGCGGTGGTAGATTTGGGAATAGCTTAAGCCAGTTTAGGAACTTAAGCCAGAGGCTTGCAGATGCTGTAGAAGGAACTCAGCAGT TTATTTCTCCTGATTTCCGAGAAGTTTTCGCTACGACGTTGGAAGATGTTGTTGAAGAGCTCGAATTCGCTGCCAAATGCAATTGGGACTTCGATCATTA TCTCGAAGAGGACTTGCCCTCCGCGATGGAGTATATAAGGAGTCGAAGCGAACCGAATGATGGCAAGTTGTTTGCAGTCGGGCACTCCATGGGCGGGATC CTCCTTTATGCAATGCTCGCCCGGTCAGGTTCTCTAGGAAGAGATTCCGGGGTGGCATCGATAGCTACATTGGGGTCATCGCTCGATTACACGCCTTCAA ACTCGTCGCTCAAGCTTCTCCTGCCGGTGGCAGATCCAGCAAAGGCTCTCAACGTTCCTGCTATCCCCGTCGGGAAAATGATTTCAACAGCTCATCGATT GTCGTCGAACATCCCCTATTTGATGCCGTGGTTGAAGTCTCAGATCACCATCCCTGGCATGCTGGATTCCGAAGCGTTGAAAAGGCTCGTGTCAGACGGC CTTTGTACAGTCCCTGCCAAGCTTCTACTTCAGATGACGACAGCATTCCAAGAAGGCGGACTTCGGAACAGAACCGGAAACTTCTTCTACAAGCATCATC TGCGAAAGAGTAACATTCCGGTGTTGGCTCTAGCTGGGGATCGAGATCTCATCTGCCCACCAGCGGCCGTTTATGAGACGGCTAAGGTTATTCGTAAGGA CTTGGTTACATACCGAGTGATTGGAGGAGGACGTGGTGGTGCGAACTGTGGACATTTCGATCTGGTTGGAGGTCGTTTGGTACGAACTAATCCATTTCGT ATTAGATCAGATCATCAACTGTTTTTCTTTTGCATTGTTAGTTCTCAATCCTGGGATTTGTTCAACTCTGCAGGCTTCTCGCGAAGTGTATCCACTCATA ACCGATTTCTTGGGCCGACGAGATCTATGACTGCGAGCTTTGCCTGGTAG
AA sequence Show only first row Show all	>Lus10013496 pacid=23155131 polypeptide=Lus10013496 locus=Lus10013496.g ID=Lus10013496.BGIv1.0 annot-version=v1.0 MAAAPAATHLCCRTPISPPSSRPVAGILSLPRPRSAFYPPRAAAPLRKISAAPVAVEGRKVEKKPEICTADELHFVDVYNSDWKLALWRYLPSSSSSATR RKHPLLLLSGIATNAVGFDLCPEVGKATQASFARSMAAEGFDTWVLELRGSGLSILGAENEISSFVKSRIERRRPSELVMNLLERFSSFFDEGRVAETGE FWCIQCGGRFGNSLSQFRNLSQRLADAVEGTQQFISPDFREVFATTLEDVVEELEFAAKCNWDFDHYLEEDLPSAMEYIRSRSEPNDGKLFAVGHSMGGI LLYAMLARSGSLGRDSGVASIATLGSSLDYTPSNSSLKLLLPVADPAKALNVPAIPVGKMISTAHRLSSNIPYLMPWLKSQITIPGMLDSEALKRLVSDG LCTVPAKLLLQMTTAFQEGGLRNRTGNFFYKHHLRKSNIPVLALAGDRDLICPPAAVYETAKVIRKDLVTYRVIGGGRGGANCGHFDLVGGRLVRTNPFR IRSDHQLFFFCIVSSQSWDLFNSAGFSRSVSTHNRFLGPTRSMTASFAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15060			Uncharacterised conserved prot...		Lus10013496 [exp]	0	1
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	4.6	0.9180
AT5G47040		LON2	lon protease 2 (.1)		Lus10001084 [exp]	5.3	0.9133
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	6.0	0.9008
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	6.0	0.8919
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	6.5	0.9059
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	7.4	0.8767
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	7.9	0.8830
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	8.0	0.8869
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	14.0	0.9001
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10038988 [exp]	15.0	0.8659

Compare expression of checked genes

Lus10013496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.