Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73770 54 / 2e-09 unknown protein AT3G18240 45 / 7e-06 Ribosomal protein S24/S35, mitochondrial (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007968 [exp] 217 / 1e-73 AT1G73770 54 / 2e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046000 [exp] 60 / 4e-12 AT1G73770 / unknown protein Potri.015G044100 [exp] 54 / 4e-09 AT3G18240 461 / 2e-161 Ribosomal protein S24/S35, mitochondrial (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013498 pacid=23155077 polypeptide=Lus10013498 locus=Lus10013498.g ID=Lus10013498.BGIv1.0 annot-version=v1.0 ATGAAAGGAACAACTCTGTTCAGAGCTTTCTCAGCCTCCACTCGAACCCTTTTCCGTACCAAACCCATCCAAACCCCCAAATCTCTAGTGATCGCTAGTT ATGCTAATCCGACAACTCCAAGCCGGTTTTACTCGTCGGATTCATCGAGTAAACCAACACCCAGCCAGGTCGATAATCAGCCTGGTAATAATCCAGCAGT TGAAGGCGTAGAAATCGTCAGCGATGAAGAGCTGAAAAGGCGCATCGAGAGATTCTACGACGGGGACGGCGACGCGATTCCATCGATTTTCGAAGCCATC TTGGCGAGAAAGCTGGCTGGGGTGCACGACGATGAGAATCTGATGAAAGAGCTCCGGGAGAAGTTTCCGGCGGAGATAAATGGGAAGGACGGAGAAGTTT CCGACTGGGATGATGACCTGGACGATGAAGAGGATGACGAGGATGATGATTAG
AA sequence Show only first row Show all	>Lus10013498 pacid=23155077 polypeptide=Lus10013498 locus=Lus10013498.g ID=Lus10013498.BGIv1.0 annot-version=v1.0 MKGTTLFRAFSASTRTLFRTKPIQTPKSLVIASYANPTTPSRFYSSDSSSKPTPSQVDNQPGNNPAVEGVEIVSDEELKRRIERFYDGDGDAIPSIFEAI LARKLAGVHDDENLMKELREKFPAEINGKDGEVSDWDDDLDDEEDDEDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73770			unknown protein		Lus10013498 [exp]	0	1
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	4.1	0.7922
AT5G27820			Ribosomal L18p/L5e family prot...		Lus10031487 [exp]	4.6	0.7214
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	7.9	0.7622
AT1G73770			unknown protein		Lus10007968 [exp]	12.0	0.6286
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	13.6	0.7380
AT5G27120			NOP56-like pre RNA processing ...		Lus10033846 [exp]	16.0	0.7253
AT1G78190			Trm112p-like protein (.1)		Lus10032269 [exp]	18.3	0.6676
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	18.8	0.7231
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	21.0	0.7145
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10039528 [exp]	24.1	0.7070

Compare expression of checked genes

Lus10013498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.