Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007969 [exp] 71 / 4e-16 AT1G48745 57 / 3e-11 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013499 pacid=23155083 polypeptide=Lus10013499 locus=Lus10013499.g ID=Lus10013499.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAGACGTTACTGATCATGAGTAACCGCGAGCAGCAGGAAGATCAAAAGCCAGCCGCCAGCAAGGGAATCAAGAAGAAGAATCATCACAAGC ACAAGTCCAAGAAGGCATCCGCATCGGCCTCAGCCTCGGCGGCGGCAGAGGAATCAGCTTCGTCGTCGTCTCCGCCGTCTTGTTCGTGCGGTAAGGCGGC GGAGTACGGATGTAGCTGCTGTTTGTGCTGCGTGTATTGCCCTCTCTCGGTGGTGTCGTGCTGCGTGAAGTTGCCCTGTAAGGTTGGGATCAGAGCTGCA CAGGCGGCGAAGAGGCAGTTAACTAATGGTGGTGGTGGTAGTGGAAGTAGTAGCGGTTGTTGGTCTTGTTGGAGGAAGAAGCCTTCTTACTACTATTCTT CTTCGTTCTCCGATCTCGAATTCTCTCCGCCGTAG
AA sequence Show only first row Show all	>Lus10013499 pacid=23155083 polypeptide=Lus10013499 locus=Lus10013499.g ID=Lus10013499.BGIv1.0 annot-version=v1.0 MEEETLLIMSNREQQEDQKPAASKGIKKKNHHKHKSKKASASASASAAAEESASSSSPPSCSCGKAAEYGCSCCLCCVYCPLSVVSCCVKLPCKVGIRAA QAAKRQLTNGGGGSGSSSGCWSCWRKKPSYYYSSSFSDLEFSPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48745			unknown protein		Lus10013499 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016498 [exp]	3.2	0.7002
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	3.7	0.7069
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10035240 [exp]	7.3	0.6802
					Lus10029487 [exp]	13.6	0.6391
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	24.0	0.6302
					Lus10005752 [exp]	28.3	0.6272
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	28.6	0.6054
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	34.2	0.6361
					Lus10008493 [exp]	36.2	0.6115
					Lus10027443 [exp]	37.7	0.6271

Compare expression of checked genes

Lus10013499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.