Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73880 330 / 3e-108 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT5G03490 249 / 3e-77 UDP-Glycosyltransferase superfamily protein (.1) AT1G51210 221 / 1e-66 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 211 / 2e-62 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT1G06000 209 / 2e-62 UDP-Glycosyltransferase superfamily protein (.1) AT2G15480 205 / 5e-60 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36800 192 / 2e-55 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 191 / 6e-55 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 191 / 1e-54 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 188 / 6e-54 UGT73B3 UDP-glucosyl transferase 73B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007972 [exp] 627 / 0 AT1G73880 355 / 1e-119 UDP-glucosyl transferase 89B1 (.1) Lus10034650 [exp] 343 / 3e-113 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10036837 [exp] 265 / 4e-83 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10036840 [exp] 265 / 4e-83 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10014079 [exp] 213 / 5e-63 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10016268 [exp] 211 / 3e-62 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10014083 [exp] 206 / 3e-60 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10019835 [exp] 203 / 3e-59 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10014086 [exp] 198 / 2e-57 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065100 [exp] 337 / 4e-111 AT1G73880 539 / 0.0 UDP-glucosyl transferase 89B1 (.1) Potri.010G137000 [exp] 283 / 2e-90 AT5G03490 482 / 4e-168 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G303600 [exp] 209 / 1e-61 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 206 / 2e-60 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 204 / 7e-60 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 200 / 3e-58 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098400 [exp] 199 / 6e-58 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303700 [exp] 198 / 2e-57 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 197 / 3e-57 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302400 [exp] 194 / 6e-56 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10013500 pacid=23155140 polypeptide=Lus10013500 locus=Lus10013500.g ID=Lus10013500.BGIv1.0 annot-version=v1.0 ATGTCCATCACTACCACCATCGCCGTATCCGGAGCCCATGTCCTGGTATATCCATACCCGGCCGCCGGCCATATAATCCCAATACTCGACCTAACCCACT ACCTACTCAGCCGTGGCCTCACCGTGACCCTCCTCCTCATCCCATGCAACCTCAACCTCCTTCATAGCTTCCGCCTTTCCCACCAAACCACCCAGCTCAA TGAGCTTATCCTCCCCGCTCCGGATCCCTCGCCGCCCGGTCCGACCCTACCCATCGGACCTATAGTCAACATGAAGTATTTCCGCGCTCACCACTACCCT CTCCTGCTTCAGCAGTTCAAATCACATCCTTGGACGATAAACCCTCCCACGGCCATCATCGCCGATTTCTTCCTCGGATGGACCAACCAATTAGCTTCCG AAATGAGCATCCGCCACGTCCTCTTCTCCCCCTCCGGTGCGTTTGGCATCTCCGTCGCAACTTCCCTCTGGCGCGACGAGCCTCCGTTTCCAATTAATGA TCAGGAGATCATAACTTTCCCTACTGTCCCCAATTCTCCTAGCTACCCTTGGCGTCAGATCTCCTTCATTTACCGGATGCTTCAGAAAGGTAATCCTGAT CGGGAAATCTTTCGGGATTGCTTCTTGGCCAATTTGTCTAGCTGGGGGACCGTGATCAATACCTTCGCTCGAATCGAGAAGCCGTACATCGACCATCTGA AGCGAGAATCATCATCCCACGGCCGTGTATGGGCGGTTGGGCCGCTGCTTCGGCCGCCATCCTCCGGCGGCGGCGGAGGAAACAGTGACCGGGGTGGAGC CAGCTCGATCCCATCCGATCAGATCATTACATGGCTCGATTCCCGGTCCGAGCGCTCTGTCGTCTATATCTGCTTCGGGAGCCGGACGTCTTTGACGGAA GAGCAATTGAAGCGTTTATCCGCCGCCTTGGAAAAGAGAACCGGAGTGTCGTTCGTGTGGTGCGTCAGGCAATCGACTGAAGCCGGGAGCGCGTTGCTTC CGGAGGAGTTTGATACTCGGGTTTCAGGGAGGGGCTTGGTGATCAGGGGGTGGGCTCCACAAGTGGAGATACTGAGACATAAAGCGGTGGGAGCTTTCCT GACGCATTGCGGATGGAATTCCACGATGGAAGGGCTGACGGCGGGAGTGGTGATGCTGACGTGGGCGACGGGGGCGGGTCCGGATTTCAATGCGCGCATG GTTGATCAGTATTCGAATGCGCAGCTGTTGGTGGATCAGCTGCGGGTTGGGATTCGAGTCGGGGAAGATACAGAAGTGATTCCCGATGAGAAGGAACTCG GGAGGGTTTTGGAGGAGGCGGTGGCGGAAGGAGGAATGTGGTGGAAGAGGGAAAGAGCGAAGGAGTTGAGGACGGCGGCGAGGGATGCTGTTGTGGAAGG TGGTAGTTCGTTTAAGGATTTGGATGAGTTTGTGGAGAAGATTAATGGGAAGACTACTAATAGTGTTCTTCATAGGGATTAG
AA sequence Show only first row Show all	>Lus10013500 pacid=23155140 polypeptide=Lus10013500 locus=Lus10013500.g ID=Lus10013500.BGIv1.0 annot-version=v1.0 MSITTTIAVSGAHVLVYPYPAAGHIIPILDLTHYLLSRGLTVTLLLIPCNLNLLHSFRLSHQTTQLNELILPAPDPSPPGPTLPIGPIVNMKYFRAHHYP LLLQQFKSHPWTINPPTAIIADFFLGWTNQLASEMSIRHVLFSPSGAFGISVATSLWRDEPPFPINDQEIITFPTVPNSPSYPWRQISFIYRMLQKGNPD REIFRDCFLANLSSWGTVINTFARIEKPYIDHLKRESSSHGRVWAVGPLLRPPSSGGGGGNSDRGGASSIPSDQIITWLDSRSERSVVYICFGSRTSLTE EQLKRLSAALEKRTGVSFVWCVRQSTEAGSALLPEEFDTRVSGRGLVIRGWAPQVEILRHKAVGAFLTHCGWNSTMEGLTAGVVMLTWATGAGPDFNARM VDQYSNAQLLVDQLRVGIRVGEDTEVIPDEKELGRVLEEAVAEGGMWWKRERAKELRTAARDAVVEGGSSFKDLDEFVEKINGKTTNSVLHRD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	0	1
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10016603 [exp]	2.4	0.9100
AT4G14680		APS3	Pseudouridine synthase/archaeo...		Lus10039389 [exp]	2.8	0.9291
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10006468 [exp]	4.4	0.9013
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10035464 [exp]	5.2	0.9255
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	10.5	0.9065
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	11.0	0.9281
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	12.5	0.9248
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	12.5	0.8884
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016870 [exp]	13.4	0.9153
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024647 [exp]	13.7	0.8761

Compare expression of checked genes

Lus10013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.