Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05670 91 / 5e-19 RING/U-box protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007973 [exp] 145 / 8e-42 AT3G05670 51 / 2e-08 RING/U-box protein (.1) Lus10015213 [exp] 83 / 3e-16 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 82 / 5e-16 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10001831 [exp] 79 / 3e-15 AT4G23840 512 / 1e-175 Leucine-rich repeat (LRR) family protein (.1) Lus10000086 [exp] 57 / 2e-08 AT3G05670 162 / 9e-44 RING/U-box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011400 [exp] 95 / 3e-20 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.005G021000 [exp] 90 / 9e-19 AT3G05670 436 / 2e-140 RING/U-box protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10013501 pacid=23155124 polypeptide=Lus10013501 locus=Lus10013501.g ID=Lus10013501.BGIv1.0 annot-version=v1.0 ATGGAGTGGGCCAAGATCGAGTCCCGTTGCCCTATGTGCAAGCGTCGTTTCACCGCCATTCGCCGGCCTCCTAAGGAAGGCGTCTTCTCAACGGAGCGCG TTGTTCGTGTACCGGAGCGTAATCAGGCTGGAAGATTAGCGAATCGTCCTGTTGATCCCCTTGCTAACGTTGAATGCACAGTGTGCAATAGATCGCACAA TGAGAGTCTTTTGCTTCTTTGCGATCTCTGTGACTCTGCTTCGCACACCTTCTGCGTCGGTCTTGATTTCACTGTGCCTGAAGGGGATTGGTTTTGTAAT GACTGTTCTGTTTCCAGAACTGAACATGATAGTATTGGTGATGCAGATGGTAGCGAAAGTAGAGAATTAGACACGGCCGAGCCTACGGATACGATGAGCC ACGATGAAGCTTGTGAGGCGGTACTACCGGGTGCTAGTGTTGTTTCTATTGAGGATATAGTTCGTGACGAACAGGATTCCCGAATGCGCACTCCGCAAAA GGAGATTTTGTGTCCTCGTCCTGGCGAGTCTGGCGGTAGTGGTTCTCGAGATAATGCAACTGAAAATGGGGCTAGGACTTTGAGAAGATGCCGGAATCTG CATGCCTGCATACGCTCGCTCCGTGAAAACTGGGAGGACTTGCGAACTGGATCGCTGAGCTTCACTTCTGCTTTGATTGAACCTGTCGATTCTAGACGGA AGTCTTCTGCTGCTGTTGTGCAGAAAAACCGGTTGGGACAACTGAGTCCCTCGAACGGCCACGAACCTGTAGTTGCTAATAATGTCCCTGCTTCCGTTAG TGGATCTAGTCAAGAAACAAGGTCTGATGCCATTGACAAAGCATGGGAAATGCTGCATCGGGCGAAATCGATGCAACAAAGAAGTACAAACATGCAGCAA GGATCTAAATTCCCTGCCCGGAGAGACAGCAATGCCCCTAAAGAAGCAAGTAGTAGAAATCCTAGTATGCATTTATTGAAAATCCAGCAACTTGGGACGA AGCAACAGAAATCTTATCATCATCCCCTTGAAAGAACTTTGCAAAAGCAAATCGAGGTTGTTAGAAAAGACTCCAGAGGACGTAGTTATCGTGATCCAGC TATGTCGTCTTCTTCTGCGTTATGGACCTCTACTTCCTCAAACGCCATTCACGAGAATAAACATGAGTTGTCACGGCAAAGGTTCACCAGTGCTTCAACG AGTCGCGTGAATGAACACAAAGGAGCTACCCGTTTGTCAGAATCAGATGCATCGACACCGACAAAGGCAGATGAGGAGACGAAACAAGAGATACAGTTTT TAGTCAAGCTGAACTTAAAGCTTCTCAGCCGCGAGGAACATCTAGGAGTGGAGAAATTTAAGGAAGTGGCAAGGGTGTCGACACATACGATAATGGCCGA ATGCGGGTTGGAGCATTCGAAACGAGCCTCCATTTCGGTCCCTAGTCCTGCTTGCGACCACGATAAGGTGAAAGATTGTGGTAAGTCGACTCTAGGAAGC AAGTGTTGCAGAGAATGCTTTCAAGGGTTTGTAAAGGAAGTTGTTGGATTGGTTTTGTCGAAGAAATGTGATTCATGA
AA sequence Show only first row Show all	>Lus10013501 pacid=23155124 polypeptide=Lus10013501 locus=Lus10013501.g ID=Lus10013501.BGIv1.0 annot-version=v1.0 MEWAKIESRCPMCKRRFTAIRRPPKEGVFSTERVVRVPERNQAGRLANRPVDPLANVECTVCNRSHNESLLLLCDLCDSASHTFCVGLDFTVPEGDWFCN DCSVSRTEHDSIGDADGSESRELDTAEPTDTMSHDEACEAVLPGASVVSIEDIVRDEQDSRMRTPQKEILCPRPGESGGSGSRDNATENGARTLRRCRNL HACIRSLRENWEDLRTGSLSFTSALIEPVDSRRKSSAAVVQKNRLGQLSPSNGHEPVVANNVPASVSGSSQETRSDAIDKAWEMLHRAKSMQQRSTNMQQ GSKFPARRDSNAPKEASSRNPSMHLLKIQQLGTKQQKSYHHPLERTLQKQIEVVRKDSRGRSYRDPAMSSSSALWTSTSSNAIHENKHELSRQRFTSAST SRVNEHKGATRLSESDASTPTKADEETKQEIQFLVKLNLKLLSREEHLGVEKFKEVARVSTHTIMAECGLEHSKRASISVPSPACDHDKVKDCGKSTLGS KCCRECFQGFVKEVVGLVLSKKCDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05670			RING/U-box protein (.1)		Lus10013501 [exp]	0	1
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10014249 [exp]	5.7	0.7508
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	7.1	0.7977
AT1G74120			Mitochondrial transcription te...		Lus10021146 [exp]	7.9	0.7841
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10032466 [exp]	9.4	0.7592
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	13.9	0.7598
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	22.2	0.7440
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	22.4	0.7893
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	23.1	0.7764
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	23.4	0.7593
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	24.8	0.7639

Compare expression of checked genes

Lus10013501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.