Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08130 297 / 3e-94 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G69010 153 / 4e-42 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 115 / 2e-28 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT1G09530 49 / 7e-06 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G24260 49 / 7e-06 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 47 / 2e-05 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G67110 46 / 3e-05 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G00050 47 / 4e-05 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G58010 46 / 4e-05 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G41315 46 / 8e-05 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007974 [exp] 829 / 0 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10026684 [exp] 149 / 1e-40 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10034358 [exp] 148 / 6e-40 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 144 / 1e-38 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10005091 [exp] 115 / 1e-27 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10006951 [exp] 44 / 9e-05 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10021846 [exp] 45 / 0.0001 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10022833 [exp] 45 / 0.0002 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10024811 [exp] 44 / 0.0002 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065000 [exp] 404 / 4e-135 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.015G048000 [exp] 392 / 7e-130 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G137600 [exp] 156 / 3e-43 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.004G112900 [exp] 156 / 4e-43 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.008G112000 [exp] 152 / 2e-41 AT1G69010 292 / 4e-98 BES1-interacting Myc-like protein 2 (.1) Potri.017G101700 [exp] 136 / 1e-35 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.002G055400 [exp] 50 / 3e-06 AT2G43010 177 / 6e-50 phytochrome interacting factor 4 (.1.2) Potri.006G135600 [exp] 47 / 2e-05 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.005G207200 [exp] 47 / 3e-05 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2) Potri.014G066500 [exp] 47 / 3e-05 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013502 pacid=23155093 polypeptide=Lus10013502 locus=Lus10013502.g ID=Lus10013502.BGIv1.0 annot-version=v1.0 ATGATCTGTAGTGGGGTTTTGAAATCGGAAATTAATTCGTGGTCTGCAGGAAGGAAAAGGAAACCTACGCTCGACTTTCTCTCGCTCTGCAGTCATTCAT CAGCTGCTGCTGCTGCTGCCCAGCAACAAGATCCCAGTAGGCCATCTTCTTCTCAAGGGGTGTACCTCAAGACTCATGATTTCCTGCAACCGCTGGAGCG GGGATCGGGCAGACCTGCTGCTAAGGAAGATACCGAGGCGAGTGAGGTCTCGACAACGACGACGACACCGAAATCGCTGCCACCGCAAGCGCCGCAGACT AAGGTGGAGCATATCCTTCCTGGGGGGATTGGGACGTACAGTATCAGCCACATATCGTACTACAACAACAATCAACAAAGAGTTCCGAAGCCGGAGGGGT CGTCGGTTTTCGCGGCGGGCCAAACCAGCAGTGGCGAGAAAAACGAGGAGAATTCGAATTGCAGTTCTTATACAGGAGGAGGAAGTGGGTTCACCCTGTG GGAAGAATCTGGTTTGAAGAAGGGAAAGACAGGGAAGGAGAATTTTGCCGACAGGTCCGACGTCGTTAGAGAGCCCCCGGTGAAGACCGGGGGGCAATGG ACCACATCGGAGCGGCCGTCACAGTCATCGACGAATCACCATAGCAATCATTTCAGCTCTCTTTCTCCTCCTGATCAGCCGTCAGGATTAAAGAGAAGGA GTTTCATGGAAATGATGAAGTCGGCGAAGGGTGATGAAGATTTGGATGATGACGAAGATTTAATCCCCAAGAAAGAAAGCCCTCCGGCTGAACTGATCGT TAAAGTTGACGGCAAGAGCTCTGATCAGAAAGCTAACACTCCACGTTCGAAACACTCTGCCACTGAACAACGGAGGAGGAGCAAAATCAATGACAGGCAA ATGTTGAGAGAAATCATACCGCATGGTGATCAAAAGAGAGATAAGGCCTCATTTCTACTAGAGGTGATTGAGTACATTCAGTTCTTACACGAGAAAGTAC ACAAATACGAAGGTTCATCATACCAGGGATGGAATCTTGATCCAGAAATAAAGCTTTCCCCATGGAAGAGCAACAACAGGACTGATGAAAGCCACGTTGA TGCTAAGAAAGTGTCCATCTGTACTGCAGCCATTCCTGGAGGAGGAGTGTTGCAGAATCCAGCGGATTCCGATACAAGCTCTGCTACGACCCCGAAAGCA GCAGCCATAGCCTTTCCCATGTTCAATCCTGCCAGAGCTGGATGTTCATCTGCTTCTCCTCAAGTAACAAGCGACGTCATCAATGGGGGCGCTATAAGGC AAGCTAGCAATTCTAAATCCGGTACCAGAAATGGGTTTGATGGTGGTGATAAGCTGAAGGAACATGGCCTTAATGTTGATGGTGGTACGATAAGCATCTC AAGTGCTTACTCTCGAGGGTTGGTGAGCAGGGTGACGGAAGCGCTACGAAGCTTAGGGGTGGATTTGTCAGAGGCGAAAATATCAGTGGAAGTAGAGGTG GGAAAGGGAAGCAAGTCCAAGAGTGCTCCACCATCCATCACCAATAAGGGAGAAAGAGAAATTGAGTTTAGCAGCAATCAACGGGAATCAAATCAATTCT TTAAGAAGCTCAAGACAGGTTAA
AA sequence Show only first row Show all	>Lus10013502 pacid=23155093 polypeptide=Lus10013502 locus=Lus10013502.g ID=Lus10013502.BGIv1.0 annot-version=v1.0 MICSGVLKSEINSWSAGRKRKPTLDFLSLCSHSSAAAAAAQQQDPSRPSSSQGVYLKTHDFLQPLERGSGRPAAKEDTEASEVSTTTTTPKSLPPQAPQT KVEHILPGGIGTYSISHISYYNNNQQRVPKPEGSSVFAAGQTSSGEKNEENSNCSSYTGGGSGFTLWEESGLKKGKTGKENFADRSDVVREPPVKTGGQW TTSERPSQSSTNHHSNHFSSLSPPDQPSGLKRRSFMEMMKSAKGDEDLDDDEDLIPKKESPPAELIVKVDGKSSDQKANTPRSKHSATEQRRRSKINDRQ MLREIIPHGDQKRDKASFLLEVIEYIQFLHEKVHKYEGSSYQGWNLDPEIKLSPWKSNNRTDESHVDAKKVSICTAAIPGGGVLQNPADSDTSSATTPKA AAIAFPMFNPARAGCSSASPQVTSDVINGGAIRQASNSKSGTRNGFDGGDKLKEHGLNVDGGTISISSAYSRGLVSRVTEALRSLGVDLSEAKISVEVEV GKGSKSKSAPPSITNKGEREIEFSSNQRESNQFFKKLKTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	3.5	0.7325
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	7.6	0.7344
AT3G26020			Protein phosphatase 2A regulat...		Lus10011381 [exp]	8.8	0.7361
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	13.6	0.7171
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	15.0	0.7338
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10004916 [exp]	18.0	0.6917
AT5G60010			ferric reductase-like transmem...		Lus10024683 [exp]	20.6	0.7095
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	29.9	0.6546
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	30.5	0.6910
AT3G26020			Protein phosphatase 2A regulat...		Lus10006440 [exp]	47.9	0.7036

Compare expression of checked genes

Lus10013502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.