Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 738 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 724 / 0 O-fucosyltransferase family protein (.1) AT1G14020 595 / 0 O-fucosyltransferase family protein (.1) AT2G03280 552 / 0 O-fucosyltransferase family protein (.1.2) AT2G37980 399 / 1e-132 O-fucosyltransferase family protein (.1) AT5G35570 385 / 2e-127 O-fucosyltransferase family protein (.1) AT1G22460 381 / 6e-127 O-fucosyltransferase family protein (.1) AT3G54100 384 / 7e-127 O-fucosyltransferase family protein (.1) AT5G01100 383 / 8e-127 O-fucosyltransferase family protein (.1) AT5G64600 363 / 2e-120 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007975 [exp] 946 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 850 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 848 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 620 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 617 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 601 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 592 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 573 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 566 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048100 [exp] 808 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 806 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 756 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 745 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 597 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 590 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 398 / 7e-134 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 396 / 1e-130 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 386 / 3e-129 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 380 / 2e-125 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013503 pacid=23155118 polypeptide=Lus10013503 locus=Lus10013503.g ID=Lus10013503.BGIv1.0 annot-version=v1.0 ATGTGCAGGAGTACTGAGAGAAACTGTGTGGAGATCGGAGAAGATAAGATGGGGTTGGTGAAGGGAGTTGAGAAGGTGAAGAAGAGCTTGTCCAAGTCGA AAATGAAGATGTGGATGGTTCGCGCTACGACCTCCGTCTTGCTCTGGACCTGCATCGTCCAATTGACGACGATCGGGGAGCTATGGGGTCCTAGAGTTTT GAAAGGATGGCCTTCTTGCTTCTCCCATGATGAATCGGCCTCTCTTTTGCTGGAGAAGCTTCCTGCTGCTCCTGCTCGCGATCTCCCACCGCCCAAGAGG GTTTACAGAAACAACGGATATCTTATGGTTTCATGCAACGGAGGTCTCAATCAAATGAGGGCTGCGATATGTGACATGGTAGCTATAGCAAGATACTTGA ATGTGACTCTGATAGTACCGGAGTTGGACAAGACATCATTTTGGGCTGATCCCAGTGAGTTCCAAGACATATTTGATGTGGATCATTTCATCACATCGCT CAGAGATGAGGTTCGGATATTGAGAGAATTGCCTCCTCGTCTTAAGAAGAGAGTGGAACTAGGAATGGCTTACACCATGGCGCCGATTAGTTGGTCAGAC ATATCCTACTATGGTAACCAGATTCTTCCTTTGATTCAAAGGTACAAAGTCGTGCATCTGAACAGAACGGATACAAGACTTGCAAACAATAATCAGCCTC TGGAGCTTCAGAAGCTACGCTGCCGTGTAAACTTCAGTGCACTTAGATTCACTCCTCAGATCGAGGAGTTGGGTAAAAGAGTGATAAGACTTCTCAGGCA AAACGGCCCGTTCTTAGTGCTTCACCTCAGATATGAAATGGATATGTTGGCATTCTCTGGCTGTTCTCAAGGTTGTAACAAAGAAGAGGTGGAAGAACTG ACGAGAATGAGATATGCTTATCCATGGTGGAAAGAGAAGGTGATAAACTCCGACCTTAAAAGAAAAGACGGGTTGTGCCCTTTGACACCGGAGGAGACAG CCCTTACTCTCAGGGCATTGGATATTGATTCAAACATGCAAATCTATATCGGAGCCGGTGAAATATACGGGGGAGACAGGAGAATGGCAAGCCTTGCAGC AGCTTATCCTAATCTGGTGAGAAAGGAAACACTATTGGAACCATCAGATTTGAGGTTCTTCCAGAACCATTCTTCGCAGATGGCAGCATTGGATTATCTC GTTTCATTAGAGAGCGACATTTTCGTGCCAACCTATGATGGCAACATGGCTAAAGTTGTCGAAGGCCACCGCAGATTTCTCGGATTCAAGAGGACAATAC TACTGGAGCGAAGGCTTTTGGTCGACTTGATAGACCGATATACCAGCGGGACTCTGAGCTGGGACGAGTTCTCAGAAGCTGTGAAGGAAACTCACGCCAC AAGGATGGGAAGCCCCGGTAAAAGGTTAGTGATCCCAGACAAGCCTAAAGAAGAAGAGTACTTCTACGCCAACCCCGAAGAGTGCCTGAATCATCAATCC GACGAGCTTCTCAGCAGTATTTGA
AA sequence Show only first row Show all	>Lus10013503 pacid=23155118 polypeptide=Lus10013503 locus=Lus10013503.g ID=Lus10013503.BGIv1.0 annot-version=v1.0 MCRSTERNCVEIGEDKMGLVKGVEKVKKSLSKSKMKMWMVRATTSVLLWTCIVQLTTIGELWGPRVLKGWPSCFSHDESASLLLEKLPAAPARDLPPPKR VYRNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSEFQDIFDVDHFITSLRDEVRILRELPPRLKKRVELGMAYTMAPISWSD ISYYGNQILPLIQRYKVVHLNRTDTRLANNNQPLELQKLRCRVNFSALRFTPQIEELGKRVIRLLRQNGPFLVLHLRYEMDMLAFSGCSQGCNKEEVEEL TRMRYAYPWWKEKVINSDLKRKDGLCPLTPEETALTLRALDIDSNMQIYIGAGEIYGGDRRMASLAAAYPNLVRKETLLEPSDLRFFQNHSSQMAALDYL VSLESDIFVPTYDGNMAKVVEGHRRFLGFKRTILLERRLLVDLIDRYTSGTLSWDEFSEAVKETHATRMGSPGKRLVIPDKPKEEEYFYANPEECLNHQS DELLSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10013503 [exp]	0	1
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	1.7	0.9112
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10031972 [exp]	2.0	0.9330
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	3.2	0.9235
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002986 [exp]	3.2	0.8780
AT5G11980			conserved oligomeric Golgi com...		Lus10024994 [exp]	6.5	0.8649
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10035131 [exp]	7.5	0.8907
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	9.8	0.8380
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	11.5	0.8439
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10021066 [exp]	13.4	0.8458
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	15.4	0.8647

Compare expression of checked genes

Lus10013503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.