Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08110 438 / 5e-136 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007978 [exp] 976 / 0 AT5G08110 1259 / 0.0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Lus10019129 [exp] 44 / 0.0004 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063500 [exp] 590 / 0 AT5G08110 1190 / 0.0 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.012G063201 [exp] 219 / 4e-66 AT5G08110 183 / 5e-54 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.012G063000 [exp] 89 / 6e-21 AT5G08110 56 / 2e-10 nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases (.1) Potri.013G158000 [exp] 50 / 6e-06 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 43 / 0.0009 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09369 [flax] [poplar] DUF1998 Domain of unknown function (DUF1998) CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10013505 pacid=23155166 polypeptide=Lus10013505 locus=Lus10013505.g ID=Lus10013505.BGIv1.0 annot-version=v1.0 ATGATCCAGGACTTGTCATCTATGGTTAGTGAATCGAGCAAGGTCAGCGAGGAGGAATGTGACGGTACATTTTCTGGGAACAAACGTAAAAGGAATCCAG AGACTGATGGTGAGGGACTAGTGTATGATGTCGTTTCGAATGTGTTGCGGTCTCCGAACAAGAACATTGCCGATGGGGAGAACTGCGAGAAGTTCGTGGA GGTTTTGGAATCGATGAGTTGTTTGACTGTTGTGCATTCGGGGAAGTGCATGTTGCTGGCTGCTTCAGCTAATGCTGGCAGAGTGGGAAGAGACGAGGGC GTTTGGTGCTTGTGTCCCGTGTGGTTGAAAAGAGTTATGCAGGCTTTTGCTTTTCTGAATGTTTATGGTTCATTTCTAAGTGTGCGAAGAGAGGAAATCA CGTCCTCTTGTTTGGAGGAGGCGCTGATGAAGCTTAGTAAGTTCGGGTTTAAGGTTTGTTTTGAAGATGTGAAGCACCTTTCCGTCCTTTGTCCTAAGGT GGTAATCGTCGCGGATGACGGTACTATGCGGGATAATTCTGCTCTGGCCCTTATTGTCATAAATTCTGACAGAGAACATAGAGATGAGATAGGAAAGGAT CATGGAAATGGTAGGAAAGCTATTTCCTTATCGAGGATGCTCACTGCCTTGAGAAAAAGGGAGAGCTTATTCAAAACTTATGTGCGTGAAGCAATTAGGA CATTGAAGTGTATTCTGTGTGAAGCACAGCATGGTAAAAGTGGTAAGGCACTAGAGATTACGTTTTCCTTGGATGAACTACTAACATTTCTGAAGGCAGG TGGGATTCCTTGGAGTGGAGATCATAAGAAATCAACAAAGAAATGCTGGACTTCATCTTCAAGCTCTCACATATCTCATTGCAAGCCCGAGTCTCTGACT GTATTGTACTTCTTCACTTACCAGAACACAAATCAGTTGTTGCCGATAGAAATGGTCCAACATCTTCAAAAGGGGATGGGTTCCGATGGCCAGATGGTGC ACGTTGAGCAGATTAGGCCAAGAGAAGCTCAATATGTGGATATTCCTGCTGAACTCTCAAACGATACAAAATCTGTTTTGAAATGCATGGGGATCAAGAA ACTGTATAGCCATCAGGCCGAATCTATTACGGTTTCCCTGAAGAGGAAGAATGTTGTGGTGGCAACGGTGACATCTAGCGGAAAATCTCTTTGCTACAAT GTTCCTGTTCTGGAAGTATTATCCAAAGATTTACTGTCATGTGCTCTGTACTTGTTTCCAACGAAGGCATTAGCTCAAGATCAGCTGAGAGCATTGCTGA CAATGACAGAAGCCTATGACACAAGCATAAACATTGGTGTATATGATGGCGACACTTGTCAGAGCGATAGAATGTTGCTTCGGTCGGATGCTAGACTGTT GATTACAAATCCAGACATGTTACACATGTCGATCTTACCTCACCATGGACAATTTAGTAGAATCTTAGCAAATCTCAGGTTTGTGATCATTGATGAAGCT CACACCTATAAGGGGGCGTTTGGATGTCATACCTCTCTCATACTGAGAAGACTTCGCCGCTTATGTTCTCATGTCTATGGTACCGATCCTTCTTTTATAT TCTCTACGGCAACTTCTGCCAACCCCAGGGAGCATTGCATGGAGCTTGGAAATCTGTCAACATTGGAGCTAATTCAAAATGATGGGAGCCATTCTGCTGA AAAGCTTTTTGTCCTTTGGAATCCTTCTTCTCCTAGATATGTGCAAAATGATTGCGAAACTGGTATGGATATCAACGGTTCTGCAGATAAAAGCATAAGG GTGATAGACACTCAACAGAATGAACTCCTTGAAGAGATTGAGGAAAGCAAAGCTTTCTTTCAGGTCTATGAAGGTGCAATCTATCTGCACCAGGGGAAGT CTTATCTCATCAACGAGCTTGATGTATCGGAGAAGATTGCTTGGTGCCAACAAGCTCATGTGGACTACTGTACGAAAACTCGAGACTATACAGACGTCCA TGTCATGGGAGGTGGGAGGATTGGTATCCAAGGCTTTGCACTCCATTTGCAGGAGTATCCAGTGAGGGCTAGCAACCAGTCTAAAAGAACAACAGGTCAA GCACGATCTTGCAAAGTAACAACCACCTGGTTTGGATTCCGTCGCATGGCTAGAGGAAGCAACAAAGTCATAGACACAGTTGATCTTTCATTGCCCAGCT ACTTCTACGAATCACAGGCTGCTTGGATTGGAGTTCCACAATCGCTTAAGAAATCGGCCGAGGACAGTAGTTTTTCGTTTCGTGGTGGGCTTCATGCTGC TTCTCATGCTCTTCTCAATGTGGTGCCTTTATATGTGCGGTGCAATTACTCGGACTTGGCTCCAGAATGCCCAAACCCTCATGACACTCGCTATTTCCCT GAAAGAATTCTGGTATATGATCAGCATCCCGGAGGAACTGGTGTCTCAAAGCAGCTTCTGACAGCAGCACTGGAGCTTCTCACGTCATGCCACTGCCATG GATACACTGGCTGCCCAAACTGTGTTCAGAGTGTGGTCTGTCATGAATACAACGAGGTGATCCACAAGGAAGCAGCCATTATGATAATTAAGGGTGTGCT GGATGCACAGAAGTCCTACTTAAAGGAACTTGACAAATCTTCTTGCACTTTGGCCGAGACATATGTGCGGTGCAATTACTCGGACTTGGCTCCAGAATGC CCAAACCCTCATGACACTCGCTATTTCCCTGAAAGAATTCTGGTATATGATCAGCATCCCGGAGGAACTGGTGTCTCAAAGCAGCTTCTGACAGCAGCAC TGGAGCTTCTCACGTCATGCCACTGCCATGGATACACTGGCTGCCCAAACTGTGTTCAGAGTGTGGTCTGTCATGAATACAACGAGGTGATCCACAAGGA AGCAGCCATTATGATAATTAAGGGTGTGCTGGATGCACAGAAGTCCTACTTAAAGGAACTTGACAAATCTTCTTGCACTTTGGCCGAGACGTGA
AA sequence Show only first row Show all	>Lus10013505 pacid=23155166 polypeptide=Lus10013505 locus=Lus10013505.g ID=Lus10013505.BGIv1.0 annot-version=v1.0 MIQDLSSMVSESSKVSEEECDGTFSGNKRKRNPETDGEGLVYDVVSNVLRSPNKNIADGENCEKFVEVLESMSCLTVVHSGKCMLLAASANAGRVGRDEG VWCLCPVWLKRVMQAFAFLNVYGSFLSVRREEITSSCLEEALMKLSKFGFKVCFEDVKHLSVLCPKVVIVADDGTMRDNSALALIVINSDREHRDEIGKD HGNGRKAISLSRMLTALRKRESLFKTYVREAIRTLKCILCEAQHGKSGKALEITFSLDELLTFLKAGGIPWSGDHKKSTKKCWTSSSSSHISHCKPESLT VLYFFTYQNTNQLLPIEMVQHLQKGMGSDGQMVHVEQIRPREAQYVDIPAELSNDTKSVLKCMGIKKLYSHQAESITVSLKRKNVVVATVTSSGKSLCYN VPVLEVLSKDLLSCALYLFPTKALAQDQLRALLTMTEAYDTSINIGVYDGDTCQSDRMLLRSDARLLITNPDMLHMSILPHHGQFSRILANLRFVIIDEA HTYKGAFGCHTSLILRRLRRLCSHVYGTDPSFIFSTATSANPREHCMELGNLSTLELIQNDGSHSAEKLFVLWNPSSPRYVQNDCETGMDINGSADKSIR VIDTQQNELLEEIEESKAFFQVYEGAIYLHQGKSYLINELDVSEKIAWCQQAHVDYCTKTRDYTDVHVMGGGRIGIQGFALHLQEYPVRASNQSKRTTGQ ARSCKVTTTWFGFRRMARGSNKVIDTVDLSLPSYFYESQAAWIGVPQSLKKSAEDSSFSFRGGLHAASHALLNVVPLYVRCNYSDLAPECPNPHDTRYFP ERILVYDQHPGGTGVSKQLLTAALELLTSCHCHGYTGCPNCVQSVVCHEYNEVIHKEAAIMIIKGVLDAQKSYLKELDKSSCTLAETYVRCNYSDLAPEC PNPHDTRYFPERILVYDQHPGGTGVSKQLLTAALELLTSCHCHGYTGCPNCVQSVVCHEYNEVIHKEAAIMIIKGVLDAQKSYLKELDKSSCTLAET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	0	1
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	4.2	0.9297
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10009926 [exp]	6.3	0.9238
AT2G40316			unknown protein		Lus10017429 [exp]	7.4	0.7573
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	7.7	0.9235
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013883 [exp]	7.7	0.7494
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007117 [exp]	8.4	0.8101
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	8.9	0.9235
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	10.0	0.9235
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	11.0	0.9235
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	11.8	0.9235

Compare expression of checked genes

Lus10013505 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.