Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18580 774 / 0 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 540 / 0 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT5G47780 424 / 1e-142 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 406 / 7e-135 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 388 / 1e-127 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 348 / 1e-113 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 341 / 8e-111 GAUT9 galacturonosyltransferase 9 (.1) AT2G46480 330 / 4e-107 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 276 / 3e-86 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 274 / 2e-85 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007979 [exp] 984 / 0 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10018554 [exp] 541 / 0 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10041389 [exp] 420 / 2e-140 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 419 / 2e-138 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 416 / 2e-138 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 413 / 1e-137 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 398 / 3e-127 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 379 / 2e-116 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011834 [exp] 348 / 1e-113 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G064500 [exp] 828 / 0 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1) Potri.015G060800 [exp] 818 / 0 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.019G108900 [exp] 536 / 0 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.013G146200 [exp] 525 / 0 AT2G20810 820 / 0.0 galacturonosyltransferase 10 (.1) Potri.016G001700 [exp] 425 / 2e-142 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 419 / 1e-139 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 411 / 2e-136 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 402 / 7e-133 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.006G001100 [exp] 390 / 1e-129 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 360 / 2e-118 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10013506 pacid=23155146 polypeptide=Lus10013506 locus=Lus10013506.g ID=Lus10013506.BGIv1.0 annot-version=v1.0 ATGCGGAGGCGGGCGGCCGAGTACCGCCGCCCGGTTAGGAGGAGGTATTCGCATTGGATCTGTGTGCTTCTCGGCATGTTCCTGATTGCCGGATTGGTTT TGTTCGTCTTCCACCATAACCAACGCGAAGATCGCGTCGAGCAGATCACCATGGAGAGGAAGTCACGATCGGAGCTGGATAATCACGAGAGCTTCAACTT CACCAAAGAAATACTAAGCCCCACCTCGTATTCCAGACAATTAGCTGAGCAAATGATACTCGCCAAGGCATTCGTCATCATCGCAAAGGACCACAACAAT CTCCACCTTGCTTGGGAGCTAAGCAAACGGATCCGTAGCTGCCAGCTCTTACTCTCAAAAGCGGCCATGAGAGGAGAGCCGATATCACCACAAGAAGCCG AACCAGTGATAAGCAATCTCTCGTATCTAATCTTCAAAGCCCAAGACGCTCACTACGACGTCGCCACCACCATGATGACGATGAAGTCTCATATCCAGGC CCTCGAAGAACGTGCAAACGCAGCGACAGTACAGAGCACGGTTTTTGGACAGCTTGTGGCCGAAGCTCTCCCCAAAAGCCTCCATTGCCTGAAACTAAAG CTCACAACCGATTGGCTCTCGAAACCCCCCCTGAAAGCTCTCGCAGAGGAAAATACAAACCCCCCTCGAGTTTCGGATAACAACCTCTACCATTTCTGCA TCTTCTCGGATAACGTTCTGGCTACATCGGTGGTTGTCAACTCCACAGTCTCGAATGCTGATCATTCGAAGCAGCTCGTTTTCCATATCGTCACGAATGG AGTCAGCTTCGGAGCAATGCAGGTGTGGTTTTTGACTAACGACTTCGGAGGAGCTACCATCGAAGTACAGAACATCGAGGAGTTCCGGTGGCTGAATGTT TCGTACGCTCCCGTCGTGAAACAGCTGCTGGATAAAGACTCCCGCGATTTCTATTTCGGAAGGTACGAGAACGAGAAAGTCGAGATTAAACTGCAGAACT CAAAGTACTTGTCTTTACTGAACCACCTCCGGTTTTACATCCCGGAGATCTATCCCCAGCTGGAGAAGATCGTATTACTCGACGATGATGTGGTAGTCCA GAAAGATCTGACGCAGCTCTTCTCTCTCGATCTTCACGGAAACGTGAACGGAGCTGTGGAGACCTGCCTCGAGTCATTCCATCGTTACTACAAGTATCTC AACTTCTCGAACCCGGTCATCAGCTCCAAATTCGACCCTCAGGCATGCGGGTGGGCGTTCGGTATGAACGTGTTTGATTTGATCGGGTGGAGGAAGGCGA ACGTCACTGGACGATACCATTTTTGGCAGGATCGGAACATGGACCGTACGCTATGGAAGCTTGGGACGCTCCCGCCTGCTCTGCTGGCGTTTTATGGCCT GACGGAGCCACTCGATCGGAGGTGGCACGTGTTGGGATTGGGTTACGATATGAACATCGACGACCGGCTGATCGAGAGTGCTGCGGTGATCCATTTCAAT GGGAATATGAAGCCATGGCTGAGACTTGGGATTGGCAGGTATAAGCCTCTGTGGGAAAGGTACCTAAACCAGAGCCACCCTTATTACAGAGATTGTGTCA CTAGTTAG
AA sequence Show only first row Show all	>Lus10013506 pacid=23155146 polypeptide=Lus10013506 locus=Lus10013506.g ID=Lus10013506.BGIv1.0 annot-version=v1.0 MRRRAAEYRRPVRRRYSHWICVLLGMFLIAGLVLFVFHHNQREDRVEQITMERKSRSELDNHESFNFTKEILSPTSYSRQLAEQMILAKAFVIIAKDHNN LHLAWELSKRIRSCQLLLSKAAMRGEPISPQEAEPVISNLSYLIFKAQDAHYDVATTMMTMKSHIQALEERANAATVQSTVFGQLVAEALPKSLHCLKLK LTTDWLSKPPLKALAEENTNPPRVSDNNLYHFCIFSDNVLATSVVVNSTVSNADHSKQLVFHIVTNGVSFGAMQVWFLTNDFGGATIEVQNIEEFRWLNV SYAPVVKQLLDKDSRDFYFGRYENEKVEIKLQNSKYLSLLNHLRFYIPEIYPQLEKIVLLDDDVVVQKDLTQLFSLDLHGNVNGAVETCLESFHRYYKYL NFSNPVISSKFDPQACGWAFGMNVFDLIGWRKANVTGRYHFWQDRNMDRTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIESAAVIHFN GNMKPWLRLGIGRYKPLWERYLNQSHPYYRDCVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	0	1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	1.4	0.9612
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	1.7	0.9593
AT1G21370			unknown protein		Lus10029764 [exp]	2.0	0.9553
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	2.8	0.9594
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	4.2	0.9308
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	4.5	0.9517
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	5.0	0.9009
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10014495 [exp]	5.1	0.9243
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	5.5	0.9381
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10022862 [exp]	5.7	0.9181

Compare expression of checked genes

Lus10013506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.