Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13850 127 / 2e-35 AS2 LBD22 LOB domain-containing protein 22 (.1) AT1G72980 103 / 5e-27 AS2 LBD7 LOB domain-containing protein 7 (.1) AT3G47870 100 / 1e-24 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT3G27650 91 / 1e-22 AS2 LBD25 LOB domain-containing protein 25 (.1) AT1G65620 90 / 7e-22 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT5G63090 89 / 8e-22 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT2G28500 90 / 2e-21 AS2 LBD11 LOB domain-containing protein 11 (.1) AT1G07900 88 / 3e-21 AS2 LBD1 LOB domain-containing protein 1 (.1) AT1G31320 85 / 2e-20 AS2 LBD4 LOB domain-containing protein 4 (.1) AT2G23660 87 / 5e-20 AS2 LBD10 LOB domain-containing protein 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002513 [exp] 111 / 2e-29 AT3G13850 161 / 1e-48 LOB domain-containing protein 22 (.1) Lus10003789 [exp] 109 / 6e-29 AT3G13850 162 / 7e-49 LOB domain-containing protein 22 (.1) Lus10008629 [exp] 108 / 1e-27 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10033111 [exp] 104 / 2e-26 AT3G47870 194 / 5e-60 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10036665 [exp] 103 / 3e-26 AT3G47870 182 / 2e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10025840 [exp] 92 / 4e-22 AT5G66870 184 / 4e-57 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10022264 [exp] 90 / 8e-22 AT5G63090 223 / 9e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10023434 [exp] 88 / 1e-21 AT3G26660 131 / 5e-40 LOB domain-containing protein 24 (.1) Lus10039940 [exp] 88 / 2e-21 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G196400 [exp] 129 / 3e-36 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.003G039700 [exp] 130 / 1e-35 AT3G13850 184 / 6e-56 LOB domain-containing protein 22 (.1) Potri.015G066700 [exp] 113 / 4e-30 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.012G072000 [exp] 103 / 2e-26 AT3G47870 180 / 7e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.018G052700 [exp] 97 / 2e-24 AT3G13850 85 / 1e-19 LOB domain-containing protein 22 (.1) Potri.001G345700 [exp] 93 / 2e-23 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.019G092201 [exp] 93 / 1e-22 AT1G06280 139 / 5e-41 LOB domain-containing protein 2 (.1) Potri.013G123900 [exp] 92 / 2e-22 AT1G06280 135 / 2e-39 LOB domain-containing protein 2 (.1) Potri.012G083500 [exp] 90 / 3e-22 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 90 / 6e-22 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10013510 pacid=23178148 polypeptide=Lus10013510 locus=Lus10013510.g ID=Lus10013510.BGIv1.0 annot-version=v1.0 ATGAGCCACCCGCCGCCGCCGCACAAGGGACTCCTAGTCTCTTCCTCTTCCTCTTCATCATCATCCTCCTCTGGTTCTCAAGCATGTGCAGCTTGCAAAT ACCAACGCAGAAAATGCGCCCCCGATTGTCCTCTGGCCCCTCACTTCCCTCCCAATCACCACAAGGAATTCTACAATGCCCATAAACTGTTCGGTGTCAG CAACATGTTGAAGATCATAAGAGACGTCACCCCAAGCAATCGCTACCTCGCAATGAAGACCATCATCCACGAAGCCAACGTCCGTGCCCTCGACCCTGTC GGTGGCTGCTACCACATGATCCTCCGTCTCCAGTATCAGATCAAATTCCTTGAGGCACAGCTCGACCTCCTCCTTCGCCAGCTTGCGTTTTTCCAATCCT TGTCCCCATTTAACGACGATATCCCTCAAAAGGAAGGAAGCCAGGTTATGGGTCTCCAATCCTTAATTGATTTCGAACAACAGGATCATCTCCAGAGGGG CAAGGAAGAAGAAGATGGCGTGGTTGTTGAAAAATCATGTTCGGAACCGGATGCCTACAAGGTGTTTGATAATATGTCCGTGAAGATTGAGATGGAAGAA TCTCCTGGACAGGGTAAGGCGTCTTCTTCGCAGTTATTAAAGCAAGAAGAAGGTAATAGTTACGTGGTTGTAGGAGACTTTGAACAAAATGAGAGGAATC ATATTCCGGTTGGATTGCATTAG
AA sequence Show only first row Show all	>Lus10013510 pacid=23178148 polypeptide=Lus10013510 locus=Lus10013510.g ID=Lus10013510.BGIv1.0 annot-version=v1.0 MSHPPPPHKGLLVSSSSSSSSSSSGSQACAACKYQRRKCAPDCPLAPHFPPNHHKEFYNAHKLFGVSNMLKIIRDVTPSNRYLAMKTIIHEANVRALDPV GGCYHMILRLQYQIKFLEAQLDLLLRQLAFFQSLSPFNDDIPQKEGSQVMGLQSLIDFEQQDHLQRGKEEEDGVVVEKSCSEPDAYKVFDNMSVKIEMEE SPGQGKASSSQLLKQEEGNSYVVVGDFEQNERNHIPVGLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10013510 [exp]	0	1
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	8.4	0.6654
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	15.0	0.6351
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10042551 [exp]	16.2	0.5447
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	30.7	0.5716
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10010388 [exp]	34.7	0.5982
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10008098 [exp]	35.8	0.5770
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024620 [exp]	36.0	0.5709
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	47.6	0.5878
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10035692 [exp]	65.8	0.5694
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10021134 [exp]	70.7	0.5497

Compare expression of checked genes

Lus10013510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.