Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11900 235 / 3e-79 Translation initiation factor SUI1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024986 [exp] 287 / 2e-99 AT5G11900 326 / 3e-115 Translation initiation factor SUI1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G052900 [exp] 242 / 9e-82 AT5G11900 289 / 1e-100 Translation initiation factor SUI1 family protein (.1) Potri.006G228100 [exp] 242 / 9e-82 AT5G11900 308 / 4e-108 Translation initiation factor SUI1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01253 [flax] [poplar] SUI1 Translation initiation factor SUI1
Representative CDS sequence Show only first row Show all	>Lus10013512 pacid=23178128 polypeptide=Lus10013512 locus=Lus10013512.g ID=Lus10013512.BGIv1.0 annot-version=v1.0 ATGGCCGAGAAACCGCAACCCGTGACAGTTTTGTACTGTGGCGTATGCTCACTTCCACCGGAATACTGTGAATTTGGACCCGATTTCGAGAAGTGCAAAC CCTGGCTCGTCAAGAACGCCCCGGATGTCTACCCTGATCTTGTTAAAGATGCTGATGGAAATGACGCTGAAAAGGTCTCCGAACGTCTACAGTCTATCGG GATCTCCGATGGCTCCGCTGATAAGGCAGCGTCATCTGCTCAATCTGCAGGGCAGACATCAGCAGCTAAACCTGAAGAAGTCAAGCGTCTTCCTGGTGGC AAAGTAAAAAAGAAACTTTCTGCCGTTGATGAAGCTCCATTAACCATTTCTGTGAAGTATTCTCGTCCTATGTCATATGGTTTCTTTATCAGCTTTTCCA GTCTGAAGGAGCCTACTAGTAGAATTAAGCTTAGCGATGCTTCCAAAAAACTCGGAAAGAAGTTTGCTACAGGTGCTTCAGTGGTCAAGGGCCCAACTGA AAAGGAACAAATTGATGTCCAAGGAGACATAGCGTATGATATCGTCGAGTTTGTCACTGATACTTGGCCGGATGTGCCTGAGAGAGCTATCTACTTCATA GAAGATGGGAAGAAAGTGCCAGCTGCCTGA
AA sequence Show only first row Show all	>Lus10013512 pacid=23178128 polypeptide=Lus10013512 locus=Lus10013512.g ID=Lus10013512.BGIv1.0 annot-version=v1.0 MAEKPQPVTVLYCGVCSLPPEYCEFGPDFEKCKPWLVKNAPDVYPDLVKDADGNDAEKVSERLQSIGISDGSADKAASSAQSAGQTSAAKPEEVKRLPGG KVKKKLSAVDEAPLTISVKYSRPMSYGFFISFSSLKEPTSRIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIAYDIVEFVTDTWPDVPERAIYFI EDGKKVPAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	0	1
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	1.7	0.8359
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	5.5	0.7525
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	5.7	0.7932
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	6.0	0.7617
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	7.4	0.7325
AT4G30830			Protein of unknown function, D...		Lus10035817 [exp]	15.4	0.6689
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	17.7	0.7475
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	19.5	0.7325
AT3G57360			unknown protein		Lus10032322 [exp]	21.5	0.6920
AT1G76200			unknown protein		Lus10034571 [exp]	24.4	0.7524

Compare expression of checked genes

Lus10013512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.