Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33030 728 / 0 SQD1 sulfoquinovosyldiacylglycerol 1 (.1) AT1G63180 56 / 4e-08 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G12780 55 / 6e-08 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT4G10960 54 / 1e-07 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 51 / 1e-06 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT3G53520 48 / 1e-05 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT1G64440 45 / 5e-05 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024985 [exp] 905 / 0 AT4G33030 726 / 0.0 sulfoquinovosyldiacylglycerol 1 (.1) Lus10032973 [exp] 183 / 2e-56 AT4G33030 176 / 1e-54 sulfoquinovosyldiacylglycerol 1 (.1) Lus10023074 [exp] 51 / 1e-06 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 50 / 3e-06 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 50 / 3e-06 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228000 [exp] 735 / 0 AT4G33030 751 / 0.0 sulfoquinovosyldiacylglycerol 1 (.1) Potri.003G123700 [exp] 54 / 1e-07 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.001G090700 [exp] 51 / 8e-07 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 50 / 2e-06 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10013513 pacid=23178149 polypeptide=Lus10013513 locus=Lus10013513.g ID=Lus10013513.BGIv1.0 annot-version=v1.0 ATGCCGCACCTGCTTTCAACTTCTTGCTCCCTGAAATTGTGCTCCTTCCGCAAATCTCTTCCTCAATCGTTTCGTCACCTACACGCTTCAGAATATCCTG GATGTCTCCCATCCAAAGCATCCAGGAATCAGTTTAATGGGCTTTTCTTGCAGCAAAATCCATCACGGAGAAGCTGTGCTGTTCGTGCTGCAATCCCCGC TAGCAAAGAACTTCAAACTGGTAAGCCCAGCTCTGGAATCTACCAGGCCGCTGATGGTGGTGGACTTCCCAGAGCACAAAGGGTTATGGTAATTGGTGGA GATGGTTACTGTGGCTGGGCTACTGCTCTACACCTCTCTAATAAAGGTTACGACGTAGCTATTGTTGATAACCTTGTACGCCGCAGCTTTGATCAGCAAC TGGGGCTGGACTCCCTTACCCCTATTGCTTCCATTCACAATCGGATTCGTCGTTGGAAGTCTGTCACTGGAAAGACTATTGACCTCTACATTGGTGACAT TTGCGAATTTGGATTCTTAGAAGAAGCCTTCAGGTCATTCCAGCCTGATGCTGCTGTCCATTTTGGGGAACAACGTTCTGCTCCTTATTCGATGATTGAT CGCTCTAGAGCTATCTATACTCAGCACAACAATGTGATTGGAACACTAAACGTTCTGTTTGCCATTAAGGAATTCCAAGAGAATTGTCACCTAGTGAAGC TTGGAACAATGGGGGAGTATGGAACCCCCAACATTGATATTGAGGAAGGTTATATAACAATAACCCATAATGGTCGAACAGATACATTACCTTATCCTAA GCAAGCTAGTTCCTTTTACCATCTTAGCAAGGTGCATGACTCACACAACATAGCTTTCACTTGTAAAGCTTGGGGAATTAGAGCTACTGATCTAAATCAA GGAGTCGTTTATGGTGTAAGGACAGAAGAGACGGAAATGCATGAAGAGTTGCAAAACAGGCTTGACTATGATGCTGTCTTTGGAACTGCACTGAATCGCT TCTGCGTTCAGGCTGCTGTAGATCATCCGCTGACGGTCTATGGGAAAGGTGGTCAGACCCGGGGTTACTTGGACATCAGGGATACAGTTCAATGTGTTGA ACTAGCGATTGCAAACCCTGGACGGCCTGGAGAATTCAGAGTGTTTAATCAATTTACAGAGCAGTTCTCAGTGAATGAACTTGCTTCCCTAGTTACCAGC GCTGGGAAGAAGCTGGGTCTTGGTGTGAAGACAAAATCGGTACCAAACCCAAGAGTGGAGGCGGAGGAACATTACTACAATGCTAAGCACACCAAACTGA TTGAGTTGGGACTGAAGCCACACTTGCTATCGGACTCACTCCTCGATTCGTTGCTCAACTTTGCGGTGAAGTACAAGGACCGGGTGGACACAAAGCAGAT AATGCCCAGTGTTTCATGGAAGGGTATTGGTAGCAGACCTAAGACAGTTACAGCCTAA
AA sequence Show only first row Show all	>Lus10013513 pacid=23178149 polypeptide=Lus10013513 locus=Lus10013513.g ID=Lus10013513.BGIv1.0 annot-version=v1.0 MPHLLSTSCSLKLCSFRKSLPQSFRHLHASEYPGCLPSKASRNQFNGLFLQQNPSRRSCAVRAAIPASKELQTGKPSSGIYQAADGGGLPRAQRVMVIGG DGYCGWATALHLSNKGYDVAIVDNLVRRSFDQQLGLDSLTPIASIHNRIRRWKSVTGKTIDLYIGDICEFGFLEEAFRSFQPDAAVHFGEQRSAPYSMID RSRAIYTQHNNVIGTLNVLFAIKEFQENCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQ GVVYGVRTEETEMHEELQNRLDYDAVFGTALNRFCVQAAVDHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPGRPGEFRVFNQFTEQFSVNELASLVTS AGKKLGLGVKTKSVPNPRVEAEEHYYNAKHTKLIELGLKPHLLSDSLLDSLLNFAVKYKDRVDTKQIMPSVSWKGIGSRPKTVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	0	1
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	2.0	0.8917
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	3.0	0.8785
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	3.6	0.8526
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10041952 [exp]	7.1	0.8627
AT1G67660			Restriction endonuclease, type...		Lus10006437 [exp]	7.9	0.8387
AT2G28605			Photosystem II reaction center...		Lus10039615 [exp]	9.2	0.8678
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Lus10001982 [exp]	10.1	0.8801
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10041172 [exp]	10.1	0.8486
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031793 [exp]	13.6	0.8385
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	17.5	0.7987

Compare expression of checked genes

Lus10013513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.