Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11910 350 / 4e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29840 310 / 1e-106 alpha/beta-Hydrolases superfamily protein (.1) AT3G47590 310 / 4e-106 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 307 / 1e-105 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G19550 267 / 8e-89 alpha/beta-Hydrolases superfamily protein (.1) AT1G29830 57 / 4e-09 Magnesium transporter CorA-like family protein (.1.2.3) AT2G39400 47 / 7e-06 alpha/beta-Hydrolases superfamily protein (.1) AT4G17150 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012836 [exp] 320 / 1e-109 AT3G47590 359 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10001114 [exp] 47 / 1e-05 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 43 / 0.0002 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 42 / 0.0003 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227900 [exp] 376 / 2e-132 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G068000 [exp] 342 / 1e-118 AT3G47590 360 / 4e-125 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G032500 [exp] 322 / 3e-111 AT3G47590 347 / 9e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G000700 [exp] 44 / 9e-05 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G001000 [exp] 41 / 0.0006 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF08840 [flax] [poplar] BAAT_C BAAT / Acyl-CoA thioester hydrolase C terminal
Representative CDS sequence Show only first row Show all	>Lus10013517 pacid=23178142 polypeptide=Lus10013517 locus=Lus10013517.g ID=Lus10013517.BGIv1.0 annot-version=v1.0 ATGTCTCAACCCACCCTTGGAGAACGAGATCTGAAGTCAGTTCAGTCAAAAGTTGTTATACACAACCAACATGGGGAAAAGCTCATTGGGATTTTGCATG ATACCGGTTCTAAGGAGCTTGTTATCATTTGCCATGGATTTCAGTCTTCCAAGGAGCGCATACCAATGGTGAATCTTGCTGCTGCAATTGAGGGTGAAGG AACCAGTGCTTTCCGCTTTGATTTTGCTGGAAATGGGGAGAGTGAAGGGTCATTCCAGTATGGAAACTACCACCGTGAAGCTGATGATTTGCGTTCTATA GTACAGCACTTCCGCGAGGATCATGTAATTAAAGCACTTATTGGGCATAGCAAAGGGGGGAACGTTGTGATGTTGTATGCTTCAAAGTATAAAGATGTTG ACATCATAGTGAACATTTCCGGCCGATTTTATCTGGATAGGGGCATTGAAGGTCGCCTTGGTAAAGACTACTTGCAAAGAATCAGGGAAGACGGATATAT TGATGTTAAGAATAGGAAGGGACAGATGGCCTTTCGTGTTACTGAAAGGAGCCTGATGGATCGTCTAGATACAGATACTCATTCAGCATGCTTATTAATT CCACAAGAGTGCCGGGTGTTGACTGTGCATGGAACCAAAGACCGTCTTGTACCAGTTGGAGACGCTATGCAATTTGCGAAGCTAATTCGGAATCATAGAC TACGCGTTGTGGAAGCTGCGGATCATGAGTATACTTTGCACCAGGAACAGCTCATTTCCATTGTCTTGAATTTCTTACGCCAACCACCTCATTCTTTACG CTCTAGAGTCTGA
AA sequence Show only first row Show all	>Lus10013517 pacid=23178142 polypeptide=Lus10013517 locus=Lus10013517.g ID=Lus10013517.BGIv1.0 annot-version=v1.0 MSQPTLGERDLKSVQSKVVIHNQHGEKLIGILHDTGSKELVIICHGFQSSKERIPMVNLAAAIEGEGTSAFRFDFAGNGESEGSFQYGNYHREADDLRSI VQHFREDHVIKALIGHSKGGNVVMLYASKYKDVDIIVNISGRFYLDRGIEGRLGKDYLQRIREDGYIDVKNRKGQMAFRVTERSLMDRLDTDTHSACLLI PQECRVLTVHGTKDRLVPVGDAMQFAKLIRNHRLRVVEAADHEYTLHQEQLISIVLNFLRQPPHSLRSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11910			alpha/beta-Hydrolases superfam...		Lus10013517 [exp]	0	1
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	6.1	0.7867
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	7.7	0.7857
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	9.4	0.7492
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	16.4	0.7729
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	21.2	0.7536
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	24.2	0.7503
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	24.4	0.7566
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10014256 [exp]	31.7	0.7116
					Lus10033943 [exp]	31.9	0.7284
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	35.9	0.7399

Compare expression of checked genes

Lus10013517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.