Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26140 521 / 4e-177 FTSH4 FTSH protease 4 (.1) AT5G53170 329 / 3e-102 FTSH11 FTSH protease 11 (.1) AT1G50250 221 / 1e-62 FTSH1 FTSH protease 1 (.1) AT5G15250 219 / 2e-62 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT5G42270 216 / 4e-61 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G06430 205 / 3e-57 FTSH8 FTSH protease 8 (.1) AT2G30950 204 / 1e-56 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT2G29080 189 / 7e-51 FTSH3 FTSH protease 3 (.1) AT1G07510 187 / 4e-50 FTSH10 FTSH protease 10 (.1) AT5G58870 149 / 1e-37 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038819 [exp] 323 / 2e-100 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10014930 [exp] 321 / 1e-99 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 318 / 5e-98 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 314 / 2e-96 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10012277 [exp] 218 / 1e-63 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 221 / 1e-62 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10034572 [exp] 217 / 2e-62 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 220 / 3e-62 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 208 / 4e-58 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227700 [exp] 518 / 3e-176 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 337 / 2e-105 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 321 / 4e-99 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.005G249200 [exp] 228 / 3e-65 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 224 / 4e-64 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 214 / 1e-60 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 204 / 7e-57 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 201 / 2e-55 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.016G099800 [exp] 190 / 3e-51 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.009G033600 [exp] 187 / 4e-50 AT1G07510 1114 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41
Representative CDS sequence Show only first row Show all	>Lus10013521 pacid=23178135 polypeptide=Lus10013521 locus=Lus10013521.g ID=Lus10013521.BGIv1.0 annot-version=v1.0 ATGGAGGCTTTGCCTTTGACGGAAGAAGCGGCGGCGGTCAAATGGATGTGTTCCAAGATAATCGGAACCCCACCGGAATCCTCGCCGGCTTCTGGGGTCT CATCATCGACGGCGACCTACTCTCATTGGACGAGAGGTTTAAGAAGAAGGACTGTCACAAGGCATCAATCACAGTTACCGCAGTGCAAAAGCTTGTTTGT CAGGAATTATTTGTGGCTTAACACTTCCAGAACTACTGCAGGAGGAAACAAATTTTCTAGCATTCAAAGGAAGTTTCAATCGAGCTATGTTGGGAATCTA GCTCGCAGGGCACGTGATGTAGATGAAGCTAGTAAAGTTGCACACCTGAAAGAGCTCTACCACCGAAATGATCCTGAAGCAGTAATAAAAGTCTTTGAAT CTCAACCATCATTGCATCATGTTCCTTCTGCTGTTTCTGAATATGTGAAAGCACTAGTCAGAGTTGACAGACTAGATGAGAGTGAGTTGTTGAAGACCCT GCAAAGAGGTATGTCTAGTGCACTGAGAGAGGAAGAAAGTACTGGAGGTCTCTCTGTATTCAGGAGTGTCGGTAAACCAGTGAAAGAAGGTCTCTTGGGG ACTTCCAGTGCACCGATTCATATGGTTGCTTCGGAAGGAGGGCACTTTAAGGAGCAGATTTGGCGTACTATCCGGTCTATTGCATTAGCTTTTATATTGA TTTCTGGTGTTGGCGCCCTGATTGAGGACAGGGGAATTAGTAAAGGACTAGGTCTGAATGAGGAGGTCCAGCCTAGCATGGAATCTAATACCAAGTTTAG TGATGTTAAAGGAGTTGATGAGGCTAAGTCTGAACTAGAAGAAATTGTGCATTATCTTAGAGATCCGAAGAGTTCTGGAAGTGTTATGTTTCATAGAGCA ACTAATTTTCCGGAATCATTGGACAAGGCATTGGTAAGACCAGGCAGGTTTGACCGCCACATTGTTGTTCCCAACCCAGATGTAGAGGGAAGACGCCAGA TCTTAGAATCCCACATGTCAAAGGTCTTAAAGGCTGATGATGTAGATCTGATGATAATTGCCAGGGGGACTCCTGGATTTTCAGGCGCAGATCTAGCAAA TTTGGTGAATATTGCTGCTCTTAAGGCTGCAATGGATGGTGCTAAAGCAGTGAACATGATGGATCTGGAGTATGCAAAAGACAAGATCATGATGGGAAGT GAACGGAAGTCAGCAGTGATATCAGATGAGTCCCGGAAGTTGACAGCTTTTCATGAGGGTGGACATGCTCTTGTGGCTGTTCATACTGATGGTGCACTTC CAGTTCATAAAGCAACAATTGTTCCGAGGGGTATGGCTCTTGGTATGGTTTCCCAGCTGCCAGACAAGGATGAGACCAGTATATCTCGTAGACAGATGCT TGCTCGGCTTGATGTTTGCATGGGGGGAAGGGTTGCGGAGGAACTTATATTTGGCGAAAATGAAGTAACATCTGGAGCATCTTCAGATCTTCAGCAAGCG ACTAAACTTGCTAGAGCAATGGTTACAAAGTATGGGATGAGTAAAGAAGTGGGACTTGTTTGCCACAATTATGATGACAATGGCAAGAGCATGAGCACTG AGACAAGGCTTCTTATCGAGCAAGAAGTGAAGAATTTCCTAGAAAAGGCTTATAACAATGCCAAGACTATACTCACTACGCATAACAAAGAGCTTTATGC CCTTGCTAATGCATTGCTGGAGCAAGAGACACTATCAGGCAATCAAATAAAGGCTTTGCTTGCGCAAGTTAACTCACAGCAAACGCAACAGCAGCGTCAG CAGGTGGTCACTTCACAGGGAAGTTCACAAACGAAACCAGTGTCTCCCTCAACCTCTAATCCTGCTGCATCTGCTGCAGCAGCCGCAGCTGCAGCCGCTA CTGCAGCAGCCAAATCAAAAGGTGTTGCTGCGCCTGTGGGATCTTAG
AA sequence Show only first row Show all	>Lus10013521 pacid=23178135 polypeptide=Lus10013521 locus=Lus10013521.g ID=Lus10013521.BGIv1.0 annot-version=v1.0 MEALPLTEEAAAVKWMCSKIIGTPPESSPASGVSSSTATYSHWTRGLRRRTVTRHQSQLPQCKSLFVRNYLWLNTSRTTAGGNKFSSIQRKFQSSYVGNL ARRARDVDEASKVAHLKELYHRNDPEAVIKVFESQPSLHHVPSAVSEYVKALVRVDRLDESELLKTLQRGMSSALREEESTGGLSVFRSVGKPVKEGLLG TSSAPIHMVASEGGHFKEQIWRTIRSIALAFILISGVGALIEDRGISKGLGLNEEVQPSMESNTKFSDVKGVDEAKSELEEIVHYLRDPKSSGSVMFHRA TNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKAVNMMDLEYAKDKIMMGS ERKSAVISDESRKLTAFHEGGHALVAVHTDGALPVHKATIVPRGMALGMVSQLPDKDETSISRRQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQA TKLARAMVTKYGMSKEVGLVCHNYDDNGKSMSTETRLLIEQEVKNFLEKAYNNAKTILTTHNKELYALANALLEQETLSGNQIKALLAQVNSQQTQQQRQ QVVTSQGSSQTKPVSPSTSNPAASAAAAAAAAATAAAKSKGVAAPVGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26140		FTSH4	FTSH protease 4 (.1)		Lus10013521 [exp]	0	1
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	2.8	0.9318
AT4G19006			Proteasome component (PCI) dom...		Lus10012120 [exp]	5.8	0.9178
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	8.1	0.8956
AT2G44660			ALG6, ALG8 glycosyltransferase...		Lus10019495 [exp]	10.4	0.9008
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	11.7	0.9151
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	12.0	0.9057
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	16.1	0.9111
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	19.4	0.9045
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	19.4	0.8852
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	21.8	0.9069

Compare expression of checked genes

Lus10013521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.