Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26180 365 / 2e-123 IQD6 IQ-domain 6 (.1) AT1G72670 236 / 2e-73 IQD8 IQ-domain 8 (.1) AT3G22190 173 / 4e-49 IQD5 IQ-domain 5 (.1.2) AT1G17480 168 / 1e-47 IQD7 IQ-domain 7 (.1) AT5G03040 132 / 6e-34 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 127 / 4e-32 IQD3 IQ-domain 3 (.1) AT4G00820 123 / 3e-30 IQD17 IQ-domain 17 (.1) AT1G01110 122 / 6e-30 IQD18 IQ-domain 18 (.1.2) AT3G49260 117 / 2e-28 IQD21 IQ-domain 21 (.1.2.3) AT3G09710 113 / 5e-27 IQD1 IQ-domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014870 [exp] 345 / 3e-110 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10013362 [exp] 186 / 9e-54 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 168 / 7e-47 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10041419 [exp] 139 / 1e-36 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 140 / 2e-36 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 130 / 4e-33 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 128 / 6e-32 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10022399 [exp] 106 / 1e-24 AT3G49260 340 / 2e-112 IQ-domain 21 (.1.2.3) Lus10018115 [exp] 102 / 3e-23 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226600 [exp] 447 / 3e-155 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.018G062001 [exp] 328 / 2e-111 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.003G042700 [exp] 273 / 3e-87 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.001G215200 [exp] 199 / 6e-59 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 188 / 1e-54 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G131100 [exp] 147 / 3e-39 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 141 / 5e-37 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 136 / 3e-35 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.004G053000 [exp] 122 / 2e-31 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.002G178500 [exp] 124 / 1e-30 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10013522 pacid=23178141 polypeptide=Lus10013522 locus=Lus10013522.g ID=Lus10013522.BGIv1.0 annot-version=v1.0 ATGGGTGCACCAGCAAAATGGGTTAAATCCATTATGGGTTTGAACAAGTCTGACGCCATTAATGAGAAGGGAAACGGTGCCAAAGGTAAAAAATGGAAGC TTTGGAGGAGCTCCTCTGGAGAAATGGCTTCTTCCTGGAAAGGCTTCAAAGGAAGAAACATGTCAGCTTCAGAGTGTTCTGGTTCTTCCCCCAAATCAGA CCCTTTCAGTTCTGCAATGGCAACTTTGGTTCGAGCTCCTCCCAAGGATTTCAGGATTGTGAGGAAGGAATGGGCTGCTATCAGGATTCAAACAGCTTTC CGTGGATTCCTGGCGAGAAGGGCATTGAAGGCTTTGAAAGGGATAGTGAGGCTGCAAGCTCTGGTGAGAGGGAGGCAAGTGAGGAAACAAGCTGCTGTTA CGTTGAGGTGTATGCAGGCACTGGTCAGGGTCCAAGCTCGAGTGAGGGCCCGCCGTGTTCGAATGTCCATTGAAGGCCAAGCTGTGCAGACTTTGTTAAA CGAACGTCGCAGTCAGGCTGATCTCTTGAAACAAGCTGAGGAAGGGTGGTGTGACAGCAAGGGTACATTGCAAGATGTCAAAAGTAAGCTACAGCTTAGG CAAGAAGGAGCTTTCAAGAGAGAAAGGGCACTTGCTTACTCTTTGGCGCACAAGCAATGGAAGGCTACTAACTCAACAGCAGTAGCAGCAGGGTGGGAAT CAACCAAGTCTGCAGGGTGTTCTTTCAAGACTCACGAGTTTGATAACAACAGCTGGGGTTGGAGTTGGCTGGAGCGTTGGATGGCTGCCAAGCCATGGGA GAGTCGTTTGATGGAACACGACTCATCGATCGATTCTTCCTCATCCACCCTCAAATTAAACCCAACTCAGCAACAACAACAATGTTCAGTCAAAGTAAGG AAGAACAACATCAGCACTAGGATATCTGCTAAGCCGCCCACAACTACTACTCGCAACTCTTCAAGCCCAACTTCAGAATTTCAATGCTTCGATGGTGGGA GTTCAGGTTGCTCCTCACCAGTCTGCACTTCTACCACTCCAGTATCAGCTGATAGAACAGAAGACACTACTGGTAGTGGTAGCATTACTAGTAGGCCACC AAGCTACATGAGTCTTACTCAGTCTACAAAGGCAAAGAGGAAAACTTTCCCACCACATCTCTCTAACCGGGTTCAAAGGCAGTCTATGGATGACTTTCAC TTTCTCAAGAAGTCTGCGGCTTTCTCCAATTCCGATCCTCAATGCACCAGCGCTGGTGCTGTTGCTACTGATTCATCTTCTTCTTCTGTTAGTTTCTCAA GGCCACTCTGCCAGCCAAACAGATTTGATAGCAAAACAACAAGGCAGAGAGTATGA
AA sequence Show only first row Show all	>Lus10013522 pacid=23178141 polypeptide=Lus10013522 locus=Lus10013522.g ID=Lus10013522.BGIv1.0 annot-version=v1.0 MGAPAKWVKSIMGLNKSDAINEKGNGAKGKKWKLWRSSSGEMASSWKGFKGRNMSASECSGSSPKSDPFSSAMATLVRAPPKDFRIVRKEWAAIRIQTAF RGFLARRALKALKGIVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQTLLNERRSQADLLKQAEEGWCDSKGTLQDVKSKLQLR QEGAFKRERALAYSLAHKQWKATNSTAVAAGWESTKSAGCSFKTHEFDNNSWGWSWLERWMAAKPWESRLMEHDSSIDSSSSTLKLNPTQQQQQCSVKVR KNNISTRISAKPPTTTTRNSSSPTSEFQCFDGGSSGCSSPVCTSTTPVSADRTEDTTGSGSITSRPPSYMSLTQSTKAKRKTFPPHLSNRVQRQSMDDFH FLKKSAAFSNSDPQCTSAGAVATDSSSSSVSFSRPLCQPNRFDSKTTRQRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26180		IQD6	IQ-domain 6 (.1)		Lus10013522 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	1.0	0.9720
AT4G03100			Rho GTPase activating protein ...		Lus10024768 [exp]	1.7	0.9604
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	3.2	0.9658
					Lus10035795 [exp]	4.4	0.9358
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	4.9	0.9539
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	6.6	0.9574
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	7.9	0.9480
AT4G37130			hydroxyproline-rich glycoprote...		Lus10022470 [exp]	8.9	0.9342
AT5G01910			unknown protein		Lus10014179 [exp]	10.6	0.9467
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	11.5	0.9421

Compare expression of checked genes

Lus10013522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.