Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33050 484 / 4e-167 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT2G26190 474 / 8e-163 calmodulin-binding family protein (.1) AT5G57010 431 / 2e-146 calmodulin-binding family protein (.1) AT3G13600 397 / 8e-132 calmodulin-binding family protein (.1) AT3G58480 388 / 1e-128 calmodulin-binding family protein (.1) AT3G52870 320 / 6e-104 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014872 [exp] 846 / 0 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10039178 [exp] 411 / 9e-137 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 405 / 1e-135 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10025173 [exp] 405 / 2e-135 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10013759 [exp] 400 / 1e-132 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 375 / 7e-125 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 379 / 9e-125 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10003257 [exp] 350 / 1e-115 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10035595 [exp] 349 / 2e-114 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G061901 [exp] 592 / 0 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G226400 [exp] 575 / 0 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 491 / 4e-169 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.006G226500 [exp] 432 / 5e-149 AT4G33050 433 / 9e-151 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.001G006200 [exp] 412 / 1e-137 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 407 / 7e-135 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 401 / 1e-132 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 394 / 2e-130 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.001G005600 [exp] 375 / 3e-126 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 342 / 6e-112 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013526 pacid=23178151 polypeptide=Lus10013526 locus=Lus10013526.g ID=Lus10013526.BGIv1.0 annot-version=v1.0 ATGGGACTGTCTCTTTCCCTGCTTTCATCGGCTTGGAACCAAATCTTGAGACCCACTTTGCTTGGTGTATTGACCGCAGCCACCCTCGGTAAGGCTGTGC TTAGGTCTCAAAGCTTTGGAAGGAATAATATAAATGGAGGAGTTGTTGATTTCATGAGAAACAACAGCTTCAAGAAAGAGGAGTTGATGATGGAGACTTC TGAAATGATGGTTGCGGATAAGGGTTTGGTACGGTCAATGAGTTTCAAGGATTGGGGGTTGGATAATAATACTACTAGTGGTAGTGGTGGTGGCGGTGGT GAGAATAGGTTGGATAATTATGGTGCTAGTTGTAAAAAGTCAACACTAGTTCATGAAGCAATATTGAGCATAAAGAAGCCGGCGGCGTTGGTGGTACCAG AAGCAAAGGTGTTCTTTTCACCAAGGCCGGTGAGCGAGTTGGATGCAGCTGCAACTACCCTTCAGAAGGTTTACAAGAGTTACCGGACTCGAAGAAACCT TGCTGACTGTGCTGTTGTTGTGGAGGAGCTGTGGTGGAAGGCTTTGGATTCCGTAGCTCTCAAGAAGGACTCCATCTTATTCTTCGACGGTGACAAGCAT GAGACCGCTTCCTCTAAGTGGTCTCGTGCCACAAAAAGGGTTGCCAAGGTTGGAAAGGGCTTGGCCAAAGATGATAAAGCTCAAAAGCTTGCTTTACAGC ACTGGCTTGAAGCTATAGACCCACGACACAGATATGGACACAACCTACACTTCTACTATGATGTTTGGTTCAATAGCAAAAGCGCACAGCCTTTCTTCTA CTGGTTGGATATCGGTGACGGGAAAGAAATAAACTTGGAGAGATGCGGGAGGGTGAAGCTACAAAAGCAATGCATATTGTATCTTGGACCGAAAGAAAGG GAAGCTTATAAAGTGATAGTGGAGAAAGGGAAGCTGGTATACCTGGAGTCAGGGGCACTTCTGAATACAGAGGAAGGTTCAAAGTGGATATTTGTGTTGA GCACCTCAAGAGGGCTGTATGTTGGCCAAAAGAAGAAAGGGGTTTTCCAGCATTCCAGCTTCCTCTGCGGTGCTGCTACTTCTGCCGCCGGAAGACTGGT CGCCCACGACGGAGTTCTCGAGGCAATATGGCCATACAGCGGCCACTATCTTCCCACGGAGGACAATTTCAAGGAGTTCATCAGCTTCCTTGAGGAGCAT AACGTTGATTTAACCAATGTCAAGAGATGCTCGATAGATGAGGACAGCATTTCAGACATCAAAACCGGCTACCTACAAGAAGAAGGGGAAGAAGTAGCAC AAGTCAAAATCCAGGATGAAGAAAAAAATGTGGCTGTGGAGGAAACCAAAGAAGAAGAAAAGGAGGAGTTGGTGGTTGTATCAGCAGCAGCAGCCGCCAA GGAGGAGGCATTGTCGTCATCGCAATCATCATCGTCGTCATCAACGTTTGATCTGTCGAAGAGGAGGTTGTCGTGCAAGTGGAACAGTGGAGTTGGGCCG AGGATCGGGTGCGTGAGGGACTACCCAGCAGAGCTGCAGTTCAGAGCGCTGGAGCAAGTGAACTTGTCTCCAAGACCTGGAGGTTCACCATCAAATCTAC TACCAATTCCATCGCCAAGGCCAAGTCCTAAGATTCGGTTATCTCCTCGACTCTCTTACATGGGCCTCCCTAGCCCAAGGCTCTCCATACCTTCCTCCGC ATAG
AA sequence Show only first row Show all	>Lus10013526 pacid=23178151 polypeptide=Lus10013526 locus=Lus10013526.g ID=Lus10013526.BGIv1.0 annot-version=v1.0 MGLSLSLLSSAWNQILRPTLLGVLTAATLGKAVLRSQSFGRNNINGGVVDFMRNNSFKKEELMMETSEMMVADKGLVRSMSFKDWGLDNNTTSGSGGGGG ENRLDNYGASCKKSTLVHEAILSIKKPAALVVPEAKVFFSPRPVSELDAAATTLQKVYKSYRTRRNLADCAVVVEELWWKALDSVALKKDSILFFDGDKH ETASSKWSRATKRVAKVGKGLAKDDKAQKLALQHWLEAIDPRHRYGHNLHFYYDVWFNSKSAQPFFYWLDIGDGKEINLERCGRVKLQKQCILYLGPKER EAYKVIVEKGKLVYLESGALLNTEEGSKWIFVLSTSRGLYVGQKKKGVFQHSSFLCGAATSAAGRLVAHDGVLEAIWPYSGHYLPTEDNFKEFISFLEEH NVDLTNVKRCSIDEDSISDIKTGYLQEEGEEVAQVKIQDEEKNVAVEETKEEEKEELVVVSAAAAAKEEALSSSQSSSSSSTFDLSKRRLSCKWNSGVGP RIGCVRDYPAELQFRALEQVNLSPRPGGSPSNLLPIPSPRPSPKIRLSPRLSYMGLPSPRLSIPSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57010			calmodulin-binding family prot...		Lus10013526 [exp]	0	1
AT4G33050		EDA39	embryo sac development arrest ...		Lus10014872 [exp]	1.0	0.9868
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	3.5	0.9654
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	4.9	0.9610
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	5.5	0.9531
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	5.7	0.9652
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	9.2	0.9446
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10023460 [exp]	10.4	0.9627
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10017522 [exp]	13.9	0.9653
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	17.3	0.9629
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	19.4	0.9402

Compare expression of checked genes

Lus10013526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.