Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14560 427 / 1e-150 Mitochondrial substrate carrier family protein (.1) AT4G26180 359 / 5e-124 Mitochondrial substrate carrier family protein (.1) AT4G01100 196 / 1e-59 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 160 / 5e-45 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G55640 156 / 8e-45 Mitochondrial substrate carrier family protein (.1) AT2G37890 152 / 3e-43 Mitochondrial substrate carrier family protein (.1) AT3G53940 147 / 5e-41 Mitochondrial substrate carrier family protein (.1) AT5G61810 144 / 5e-40 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G07320 146 / 9e-40 APC3 ATP/phosphate carrier 3, Mitochondrial substrate carrier family protein (.1) AT3G51870 140 / 4e-38 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008572 [exp] 373 / 5e-129 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 372 / 6e-129 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 189 / 5e-57 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 188 / 1e-56 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 186 / 1e-55 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 182 / 1e-54 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 158 / 2e-45 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 150 / 3e-42 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 145 / 4e-40 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226300 [exp] 503 / 2e-180 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 375 / 3e-130 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 193 / 9e-59 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 191 / 4e-58 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 190 / 1e-57 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 189 / 5e-57 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.016G103300 [exp] 156 / 1e-44 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 153 / 1e-43 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.012G110700 [exp] 156 / 2e-43 AT5G51050 714 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Potri.015G108900 [exp] 151 / 1e-41 AT5G51050 725 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10013527 pacid=23178130 polypeptide=Lus10013527 locus=Lus10013527.g ID=Lus10013527.BGIv1.0 annot-version=v1.0 ATGAGTAGTTCACCAAGTTCTACTGCATTGTCCACCAATATGGCCGGATTAGTTGACGGTTCATCTGCACACGCTGAAGTTTCCTTCATTGATGGCATTC CCGTTTATGTTAAGGAGCTCATTGCTGGAGGAGCTGCTGGAGGAATTGCCAAAACTGCTGTTGCACCTCTTGAAAGGACTAAAATCCTATTGCAGACAAG AACGGAGGGATTTCAATCCATTGGCATCTCCCAGTCCTTGAAGAAAATTTTCAGGCATGAGGGAATTTCTGGCCTTTACAGAGGGAATGGAGCTAGTGTG CTGCGGATTGTTCCTTATGCAGCATTACATTTCATGACGTACGAGCAGTACCGTGGTTGGATCTTGGATAATTGCCCTGCACTGGGCTCTGGGCCAGTGG TTGATCTGTTTGCTGGTTCAATAGCAGGGGGGACAGCGGTTTTATGCACCTATCCCTTGGACTTGGCACGTACTAAGCTTGCTTATCAGGTTGTAGACAA AAGAAGTGTAAACTACACCGTGAAAGGCTTCCGTGCTGCACATTATAGCGGCATAAAGGATGTACTGACAAGTGTCTATGCAGAAGGTGGCATACGTGGA CTATATCGTGGAGTGGGTCCAACACTGATTGGAATTCTACCTTATGCCGGGTTGAAGTTCTACATATATGAGGAACTCAAGAGACACGTTCCTGAAGAAC GGCAAAAGTCAATCGTGATGCGGCTTTCATGTGGAGCTCTTGCTGGGTTACTTGGACAGACGTTTACCTACCCCTTAGATGTTGTCAGGCGGCAAATGCA GGTTGAGAACTTGCAGTCTACGTTTCAAGGGGATGGGAGGTCCAAGAGCACTTGGTCAAGGCTTTCATCAACAGTCCACAATCATGGTTGGAGACAATTA TTTGCCGGCCTCAGCATAAATTATATAAAGGTTGTTCCATCAGTGGCTATTGGGTTTACAGTATACGACACGATGAAGGTATGGCTACGAATTCCGCCCC GGCAGAAGCCCTCCCTTTCCACTTCATCTGGATGA
AA sequence Show only first row Show all	>Lus10013527 pacid=23178130 polypeptide=Lus10013527 locus=Lus10013527.g ID=Lus10013527.BGIv1.0 annot-version=v1.0 MSSSPSSTALSTNMAGLVDGSSAHAEVSFIDGIPVYVKELIAGGAAGGIAKTAVAPLERTKILLQTRTEGFQSIGISQSLKKIFRHEGISGLYRGNGASV LRIVPYAALHFMTYEQYRGWILDNCPALGSGPVVDLFAGSIAGGTAVLCTYPLDLARTKLAYQVVDKRSVNYTVKGFRAAHYSGIKDVLTSVYAEGGIRG LYRGVGPTLIGILPYAGLKFYIYEELKRHVPEERQKSIVMRLSCGALAGLLGQTFTYPLDVVRRQMQVENLQSTFQGDGRSKSTWSRLSSTVHNHGWRQL FAGLSINYIKVVPSVAIGFTVYDTMKVWLRIPPRQKPSLSTSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	7.2	0.7137
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10035404 [exp]	8.1	0.7334
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	13.2	0.7213
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	19.1	0.7190
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10027014 [exp]	24.7	0.6076
AT5G45280			Pectinacetylesterase family pr...		Lus10033301 [exp]	27.5	0.7110
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	29.3	0.6884
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10012930 [exp]	32.2	0.6629
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10026559 [exp]	39.3	0.6487
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	52.1	0.6705

Compare expression of checked genes

Lus10013527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.