Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11960 379 / 7e-132 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004444 [exp] 502 / 1e-180 AT5G11960 470 / 1e-167 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G060500 [exp] 407 / 6e-143 AT5G11960 460 / 1e-163 Protein of unknown function (DUF803) (.1) Potri.006G226000 [exp] 394 / 5e-138 AT5G11960 431 / 6e-152 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10013530 pacid=23178139 polypeptide=Lus10013530 locus=Lus10013530.g ID=Lus10013530.BGIv1.0 annot-version=v1.0 ATGTGGGAATCAATCATTCTGACTCTTGCGGCTACCGCTGGTAATAACATCGGCAAGGTGATAAGGGCTTATGCTTTAAACAAAGCGTGGGTAATCGGCT TTTTAATGGACATAGGTGGAGCGATGTTGATGCTTAAGGCCATATCGCAGGCCCCTGTGTCTGTAATCCAACCAGTTTCTGGTTGCGGGCTCGCTGTACT TTCAATCTTTTCTCATTTCTATCTGAAGGAGGTCATGAATGTGATTGATTGGGTTGGTATAACTTTGGCTGGGATTGGTACAATAGGAGTTGGCGCTGGA GGTGAAGATCAGGAGTCTTCTCCTGTATCAGTATTTCAGTTGCCGTGGTTGGCAGTAGTTGTTGCTTTATTCTTTGTAGTGCTAAATGGATGGCTTCGGG TTTGTAGGCGGCAACGGAGAGAACAAGATACTATGGAGTATGAAGTGGTTGAGGAAATTATATACGGCCTGGAATCAGGACTTCTATTTGGGATTTCTTC TGTGATATCAAAGATGGGATTTGTCTTCTTGGAGCAAGGGTTATCCAGAATGCTAGTTCCTGTATGCATCTCAATAAGTGTATGCTGTAGTGGGATTGGA TTTTATTATCAGACGACAGGTTTGAAGCATGGTAGAGCAATTGTGGTGTCTACATGTGCTGCTGTAGCGTCAATAGTAACTGGTGTGCTGGCTGGAATGC TCGCCCTAGGAGAACGATTACCTTCTGCTCCAGCTGCTCGTCTTTCCCTTCTACTTGGCTGGCTACTTATTGTTGCGGGTGTGTTGTTACTTGTGAGCTC GACAAGGCTACTCCGGCACCTTCCCCGGTCAGTAAAGCGCTTTCTCAAAGCTGGGGTGGACAGAAACTTCACTCCCAGTCGATCTACATCTCTGCGTGCC AAGGATTCAAACCCAAGTGCTGTAATTCAGGCAGCCACTTTGCATCACTTGATATCATCTGCACCTAAGCAGAAAGATTAA
AA sequence Show only first row Show all	>Lus10013530 pacid=23178139 polypeptide=Lus10013530 locus=Lus10013530.g ID=Lus10013530.BGIv1.0 annot-version=v1.0 MWESIILTLAATAGNNIGKVIRAYALNKAWVIGFLMDIGGAMLMLKAISQAPVSVIQPVSGCGLAVLSIFSHFYLKEVMNVIDWVGITLAGIGTIGVGAG GEDQESSPVSVFQLPWLAVVVALFFVVLNGWLRVCRRQRREQDTMEYEVVEEIIYGLESGLLFGISSVISKMGFVFLEQGLSRMLVPVCISISVCCSGIG FYYQTTGLKHGRAIVVSTCAAVASIVTGVLAGMLALGERLPSAPAARLSLLLGWLLIVAGVLLLVSSTRLLRHLPRSVKRFLKAGVDRNFTPSRSTSLRA KDSNPSAVIQAATLHHLISSAPKQKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	0	1
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	1.0	0.8542
AT1G11440			unknown protein		Lus10018397 [exp]	4.2	0.7872
AT2G07180			Protein kinase superfamily pro...		Lus10040588 [exp]	4.6	0.7844
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	7.7	0.7942
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	9.2	0.7885
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	9.4	0.7890
AT1G66420	GeBP		DNA-binding storekeeper protei...		Lus10017793 [exp]	10.5	0.8040
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10013020 [exp]	15.0	0.7735
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	17.0	0.7513
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	18.8	0.6975

Compare expression of checked genes

Lus10013530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.