Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25970 174 / 5e-47 KH domain-containing protein (.1) AT4G10070 102 / 2e-22 KH domain-containing protein (.1) AT1G33680 97 / 1e-20 KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004445 [exp] 244 / 1e-75 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10020998 [exp] 141 / 7e-36 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 140 / 2e-35 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10002947 [exp] 116 / 7e-27 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 110 / 4e-25 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10004446 [exp] 106 / 1e-24 AT2G25970 80 / 3e-16 KH domain-containing protein (.1) Lus10033557 [exp] 45 / 0.0001 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 45 / 0.0002 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10037932 [exp] 44 / 0.0003 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G055300 [exp] 219 / 1e-62 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 219 / 1e-62 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.013G099800 [exp] 119 / 5e-28 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.019G072500 [exp] 112 / 9e-26 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.004G123400 [exp] 47 / 5e-05 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 46 / 7e-05 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G230500 [exp] 42 / 0.0009 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.008G030700 [exp] 42 / 0.001 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10013531 pacid=23178147 polypeptide=Lus10013531 locus=Lus10013531.g ID=Lus10013531.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAATCGCACTACTCAGCCGTGGACGCTGCAACCGCCACCACTACTCCTAACAAGCGAAAGTACGACGACCAGCCAATCACTACTCGTCGCC CTTCTGGTTTCTCTTCGCCTGACTCCTCGGTCCCTCCTCCTTCTTACACTAATGTCCCGCCGCCTGCTGATGAGATCCAGATGGCCAAGCAGAAGGCTCA GGAAATTGCCTCCCGTCTCTTGAGCGGCGCCGCAGTAGGAGCCGGTGCCGGCGGCGACGGCTTTTCCGCGGCGGATAATAAGGGTCCCCGAGTCGCTAAA GGGGGTAGTGCCAAGATTCAAGTGACGCGAGATATGGACGCTGACCCCAATTCTCCGACCAGGATGGTAGAGCTTATAGGCATTCCTGAGCAAATTGAAA AAGCAGAACGGCTGATAACTGATGTTCTTGCTGAGGCTGATGCTGGTGGCTCTGGTACAGTTGGTCGAAGGTTTGGAGGACAGGGTGGCGGCGGGGATCA TTTTTTTTTTAAAGGCTCTCACAAAAAAGATTTGTGGAAGGTTGGTCTGGTTATTGGCAAAGGAGGTGAGACAATTAAGAACATGCAAGCCAGAACTGGT GCTCGCATTCAGGTTATACCTTTGCATCTTCCACCTGGTGATACCACTTCAGATAGGAATGTGCATATAGATGGGACAAGTGAACAGATTGAGGCTGCAA AGCAGTTGGTTAACGAAGTCATAAGTGAGAATCGCATGAGGAATTCATCAACTGGTGGATCATATTCCCAGCAAGGATATCAAACACGACCACCAGCAAA CTGGAGCACACCTGGTAGCGCTGTGCAGCAGCCAGGCTATGGGTACATGCAGCAGCCTGGACCGTATACAGGTGGCTCTGGACAGTACAATACGTCCCAG CCACCATATGGTGGATATCCTCCTCAACCATCGACCGGTGGTTATGCAGCTGGATGGGACCAGTCTACTGGATCAAATCAGATAACAAGTCAAGGTTATG ATTATTATAGTCAGCAACCTTCACAGCAGCCACCTAGCTCAGCAGGTGGTCAGGGGGCTGCAGATAATTCTGGTTATGGTTACAGTCAACCGCTGTCTGG TTATAATAATCAAGGGCAAGGTTATGGACAAGATGGTTATGGTAGTGGATACCCTCAGTCAGGTTACACTCAGCCACAAGCATATGATCATCAACAGCAG CAGGGATATACTAGTAGTGCTACGAGCTATGGTACCACCACCAACCCAACAGAAGGAGACAAGTCTGCACAAGCCCCTCCTCAGCCATCGTCTGTCGGTG GTCAGCAAGGATATGGTTCTTTCCAAAACCCAGCAAATTACCCACCTCAGGGAGCCAGTCAATCAGCAGGATATGGGATGCCACCAACGTCTCAACCTGG GTATGGATATGGATCTAACTATGGGCCACCTCCGGCAAACCCAAGTGCTTATGGACAAACCCAACAATCCCCTGATACGGGATACTGCCAGTCAGCAGCG CCTGCACAGCTAGGGTATTCTCATCAGCAACAACCAATGGGCATGGCGTCTGGTTATGGTCAGCCAGGATATGGTCCACCATATGGTCAACAAGGAGGAT ATGGACAGGGGATGGCTCCTCCTTATGGCGCCTCTTACAATAATCCACCTGTTGATGTGAGTTCTAACCTCAGTGCTCCCGCAGCTGCTGCAGTATCAGC AACACCACCACAACCTTCAAACCCCGTGCAACAGAGTGGTGCAGTTGCCAAAGCGTCTCCAAAAAGTTGA
AA sequence Show only first row Show all	>Lus10013531 pacid=23178147 polypeptide=Lus10013531 locus=Lus10013531.g ID=Lus10013531.BGIv1.0 annot-version=v1.0 MAEESHYSAVDAATATTTPNKRKYDDQPITTRRPSGFSSPDSSVPPPSYTNVPPPADEIQMAKQKAQEIASRLLSGAAVGAGAGGDGFSAADNKGPRVAK GGSAKIQVTRDMDADPNSPTRMVELIGIPEQIEKAERLITDVLAEADAGGSGTVGRRFGGQGGGGDHFFFKGSHKKDLWKVGLVIGKGGETIKNMQARTG ARIQVIPLHLPPGDTTSDRNVHIDGTSEQIEAAKQLVNEVISENRMRNSSTGGSYSQQGYQTRPPANWSTPGSAVQQPGYGYMQQPGPYTGGSGQYNTSQ PPYGGYPPQPSTGGYAAGWDQSTGSNQITSQGYDYYSQQPSQQPPSSAGGQGAADNSGYGYSQPLSGYNNQGQGYGQDGYGSGYPQSGYTQPQAYDHQQQ QGYTSSATSYGTTTNPTEGDKSAQAPPQPSSVGGQQGYGSFQNPANYPPQGASQSAGYGMPPTSQPGYGYGSNYGPPPANPSAYGQTQQSPDTGYCQSAA PAQLGYSHQQQPMGMASGYGQPGYGPPYGQQGGYGQGMAPPYGASYNNPPVDVSSNLSAPAAAAVSATPPQPSNPVQQSGAVAKASPKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	3.6	0.9393
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	4.2	0.9358
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	4.5	0.9234
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	4.6	0.9151
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10003987 [exp]	5.3	0.9037
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	5.5	0.9309
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	6.3	0.9286
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	7.7	0.9073
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	8.1	0.9052
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	8.1	0.9197

Compare expression of checked genes

Lus10013531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.