Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65480 243 / 4e-83 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 236 / 2e-80 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 188 / 1e-61 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G03840 176 / 1e-56 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT2G27550 174 / 7e-56 ATC centroradialis (.1) AT1G18100 148 / 7e-46 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004452 [exp] 314 / 4e-108 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10021372 [exp] 181 / 2e-58 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10027442 [exp] 180 / 3e-58 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 172 / 5e-55 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10020600 [exp] 170 / 2e-54 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10004886 [exp] 164 / 6e-52 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10043385 [exp] 151 / 8e-47 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10002592 [exp] 142 / 3e-43 AT1G18100 207 / 6e-69 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10018417 [exp] 139 / 4e-42 AT1G18100 205 / 4e-68 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G179700 [exp] 285 / 1e-99 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.008G077700 [exp] 281 / 3e-98 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.004G203900 [exp] 191 / 1e-62 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.009G165100 [exp] 189 / 4e-62 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.015G041000 [exp] 144 / 5e-44 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G141300 [exp] 139 / 1e-42 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 132 / 2e-40 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 131 / 4e-40 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10013532 pacid=23178144 polypeptide=Lus10013532 locus=Lus10013532.g ID=Lus10013532.BGIv1.0 annot-version=v1.0 ATGCCAAGGGACAGGGATCCATTAGTAGTTGGGCGAGTGATAGGGGATGTGTTGGAACCATTCACAAGGTCTATCCCACTAAGAGTGATTTACATGAATA ACAGAGAGATCAACAATGGCTGCGAACTCAAACCTTCTCAAGTTGTTAATCAGCCTCGTGTCGACATTGGTGGGGATGACCTCCGCACCTTTTACACTCT GGTAATGGTCGACCCTGATGCACCAAGTCCTAGCGATCCTAGTTTGAGAGAGTATTTACATTGGCTAGTCACAGATATTCCTGCCACCACTGGGGCCAAC TTTGGGCAAGAGGTGGTGTGTTACGAGAGCCCCAGGCCTTCAGTTGGGATACACCGTTTCATTTTCATATTGTTCAGGCAACTGGGTCGCCAAACGGTTT ACGCCCCCGGTTGGCGCCAGAATTTCAACACCCGCGACTTTGCTGAACTCTACAACTTAGGTCCGCCTGTTGCTTCCGTCTATTTTAACTGCCAACGAGA GAGCGGTTCTGGAGGTAGACGGCGATGA
AA sequence Show only first row Show all	>Lus10013532 pacid=23178144 polypeptide=Lus10013532 locus=Lus10013532.g ID=Lus10013532.BGIv1.0 annot-version=v1.0 MPRDRDPLVVGRVIGDVLEPFTRSIPLRVIYMNNREINNGCELKPSQVVNQPRVDIGGDDLRTFYTLVMVDPDAPSPSDPSLREYLHWLVTDIPATTGAN FGQEVVCYESPRPSVGIHRFIFILFRQLGRQTVYAPGWRQNFNTRDFAELYNLGPPVASVYFNCQRESGSGGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10013532 [exp]	0	1
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	3.6	0.9047
AT2G16460			Protein of unknown function (D...		Lus10041812 [exp]	3.6	0.9441
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10001895 [exp]	4.2	0.8981
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	5.2	0.9246
AT5G17860		CAX7	calcium exchanger 7 (.1)		Lus10001330 [exp]	6.3	0.8573
					Lus10014195 [exp]	6.3	0.9256
AT3G19010			2-oxoglutarate (2OG) and Fe(II...		Lus10004245 [exp]	6.9	0.9241
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10040160 [exp]	8.5	0.8234
AT1G71530			Protein kinase superfamily pro...		Lus10001470 [exp]	10.5	0.9175
					Lus10020194 [exp]	12.5	0.9155

Compare expression of checked genes

Lus10013532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.