Plant FIBer expression Database

Lus10013533 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68350 46 / 1e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041431
[exp]
332 / 3e-118 AT1G68350 50 / 5e-08 unknown protein
Lus10034340
[exp]
289 / 2e-101 AT1G68350 45 / 5e-06 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G122700
[exp]
55 / 1e-09 AT1G68350 87 / 4e-22 unknown protein
Potri.010G122600
[exp]
48 / 3e-07 AT1G68350 82 / 4e-20 unknown protein
PFAM info
Representative CDS sequence
>Lus10013533 pacid=23178145 polypeptide=Lus10013533 locus=Lus10013533.g ID=Lus10013533.BGIv1.0 annot-version=v1.0
ATGCGAAACAAATTGATGGCCAGAGAAAGGCTACTCATCGTCTTCCACAAATTGTCGGATCGCCTCCGAGCTTCAATCCGCAGCAGGAAACTCAGTCTAG
CTTTCCTCTCCAGAAGATTTCTCAAGCACATATATAGTTTGGACGTTGATCATTATTACCTCGATTGCCGGCGGCAAGGTCAGGAGTTCTCTGCTTCCAG
TACTCCTCTCATTTATCCCCGCCGCTACCGGGGTAACAACCATCTCGACTCTCTGTTATTGCTCCTCCGCGCCGCCGCGTGTTTCGGAGGTGGTGATCGT
GCGAGTGTCAGACTGTCGATCGGGAATAGTTTTCGGAGTCCGGATTACGTAATCGACGCCGTCTGCTGGCCGGAAGAGCAACAACCGTACGATTATGGAG
GAGGAGGAGGAGCGTTAGTGGAATGGAATGGAAGAGAGGAGGAGGAGGAGGCTGAGGAGGATTCGGTGGATTTGAAAGCTGAGAGATTCATTGAGCGGTT
TTATATGGAGATGAGAATGCAGCAGAGACGCTGA
AA sequence
>Lus10013533 pacid=23178145 polypeptide=Lus10013533 locus=Lus10013533.g ID=Lus10013533.BGIv1.0 annot-version=v1.0
MRNKLMARERLLIVFHKLSDRLRASIRSRKLSLAFLSRRFLKHIYSLDVDHYYLDCRRQGQEFSASSTPLIYPRRYRGNNHLDSLLLLLRAAACFGGGDR
ASVRLSIGNSFRSPDYVIDAVCWPEEQQPYDYGGGGGALVEWNGREEEEEAEEDSVDLKAERFIERFYMEMRMQQRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G68350 unknown protein Lus10013533
[exp]
0 1
AT1G68350 unknown protein Lus10041431
[exp]
1.0 0.9999
AT1G68350 unknown protein Lus10034340
[exp]
5.1 0.7757
AT4G12110 ATSMO1-1, SMO1-... sterol-4alpha-methyl oxidase 1... Lus10032193
[exp]
10.7 0.7521
AT1G30690 Sec14p-like phosphatidylinosit... Lus10023378
[exp]
16.4 0.7505
AT3G62100 AUX_IAA IAA30 indole-3-acetic acid inducible... Lus10009967
[exp]
16.6 0.6599
Lus10020368
[exp]
30.1 0.7234
AT5G52882 P-loop containing nucleoside t... Lus10027551
[exp]
32.0 0.6875
AT3G12110 ACT11 actin-11 (.1) Lus10004169
[exp]
33.2 0.7319
AT3G54030 Protein kinase protein with te... Lus10021112
[exp]
34.6 0.7068
AT3G54030 Protein kinase protein with te... Lus10017198
[exp]
37.4 0.7125

Lus10013533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.