Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06610 381 / 2e-131 Protein of unknown function (DUF620) (.1) AT3G19540 290 / 2e-94 Protein of unknown function (DUF620) (.1) AT1G27690 283 / 5e-92 Protein of unknown function (DUF620) (.1) AT1G49840 283 / 2e-91 Protein of unknown function (DUF620) (.1) AT1G79420 272 / 5e-88 Protein of unknown function (DUF620) (.1) AT5G05840 226 / 5e-70 Protein of unknown function (DUF620) (.1) AT5G66740 194 / 2e-58 Protein of unknown function (DUF620) (.1) AT3G55720 185 / 2e-54 Protein of unknown function (DUF620) (.1) AT1G75160 180 / 6e-53 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015972 [exp] 628 / 0 AT5G06610 426 / 6e-149 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 300 / 3e-98 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 297 / 3e-97 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 249 / 1e-81 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10001755 [exp] 245 / 4e-77 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 245 / 8e-77 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 243 / 2e-76 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 243 / 3e-76 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 241 / 2e-75 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062400 [exp] 463 / 5e-164 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 452 / 1e-159 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 293 / 9e-96 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 293 / 3e-95 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 284 / 2e-93 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 286 / 9e-93 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 279 / 2e-91 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 244 / 5e-77 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 241 / 6e-76 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 208 / 6e-64 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10013534 pacid=23168716 polypeptide=Lus10013534 locus=Lus10013534.g ID=Lus10013534.BGIv1.0 annot-version=v1.0 ATGATCAGAAACCGAAGCCGGCGAAGAACCGCCGGTGGGGGCGCAGGCGCCAACAACAGCAGCCATTTCACGTCGAAGAGTACTAGATCAGGTCGACAAT CGTGGAAATACTGGCTCAAATCTCACGTGATCTCGCTGCCGCTTCTTTTGTTCCACAAGAAGTCGTCGTCGTCGCTGTCGGAGCTCAGGACTCTCCTCAG CGTCATTGGCTGCCCTCTGTTCCCGGCCTCCATTCACCCCAAGCTCTCATCCTTCAACCAGGTGTCTTCATCGGCGCAGTACATAATCCAGCACTTCACG GCGGCGACAGGCTGCCGGAAGCTGGAAGGCAGGGTGAAGAACGTATTCGCTACTGGGAAAGTGACAATGAGGATGACAGACCACGACCATCTTGCTCTGC CCGGCGGCGGATCATCAATAGCTGAAAAGGGTTGCTTCGTGATGTGGCAGATGGTTCCCAACAAGTGGCTGATCGAGCTGGTGTTGGGCGGGCACAAGGT CGTAGCGGGGAGCGATGGCAACCTGGCTTGGCGCCATACGCCGTGGCTCGGCGCTCACACCGCAAAAGGCGGCCTCCGCCCTCTCCGTCGAGCCATCCAG GCAACAATAGCAGCGGTGTTCTCCCCAGCACAGTACATGGGCGAGAAGTGCATCAACAGTGAGGACTGTTTCGTCTTGAAGCTCGCCGCCGACCAAGGAG AGCTCTCCGACCGGAGCGACAGCACGGCGGAGATGATCAAGCACGTGACATTCGGCTACTTCAGCCAGAGGAGCGGCCTCCTGGTCTACCTAGAAGATTC TTACCTAACCAGGATCCAGTCCCCCGGGACCTACCCGACCTACTGGGAAACCACGATGGCCACCCAGATCGAGGATTACCGGCCCGTCGAAGACGGGGCA ATGATCGCTCACGGCGGACGGTCGACCGCCGTAATCAACAGATTCGGGGACAACCTCAAGGCGGGGTTGTCGTCCGTGATGACTAGGATGGAGGAGGAAT GGTCGATTGACGACGTGGCGTTTGACGTGGCGGGGCTGTCGTGTGACTGTTTCATTGCTCCCCTGGACGTTCTTCAGAGAAGGGATGATGATGTCCAGCT GGACTTGAGACCGTCTCAGCCTTGGAAAGGTGATTTGTAA
AA sequence Show only first row Show all	>Lus10013534 pacid=23168716 polypeptide=Lus10013534 locus=Lus10013534.g ID=Lus10013534.BGIv1.0 annot-version=v1.0 MIRNRSRRRTAGGGAGANNSSHFTSKSTRSGRQSWKYWLKSHVISLPLLLFHKKSSSSLSELRTLLSVIGCPLFPASIHPKLSSFNQVSSSAQYIIQHFT AATGCRKLEGRVKNVFATGKVTMRMTDHDHLALPGGGSSIAEKGCFVMWQMVPNKWLIELVLGGHKVVAGSDGNLAWRHTPWLGAHTAKGGLRPLRRAIQ ATIAAVFSPAQYMGEKCINSEDCFVLKLAADQGELSDRSDSTAEMIKHVTFGYFSQRSGLLVYLEDSYLTRIQSPGTYPTYWETTMATQIEDYRPVEDGA MIAHGGRSTAVINRFGDNLKAGLSSVMTRMEEEWSIDDVAFDVAGLSCDCFIAPLDVLQRRDDDVQLDLRPSQPWKGDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06610			Protein of unknown function (D...		Lus10013534 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	4.7	0.9723
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	6.6	0.9680
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	9.2	0.9628
AT3G52480			unknown protein		Lus10004203 [exp]	9.5	0.9586
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	10.2	0.9649
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	13.6	0.9601
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	14.1	0.9620
AT4G11950			Protein of unknown function (D...		Lus10002998 [exp]	14.2	0.9237
AT1G22030			unknown protein		Lus10019943 [exp]	15.0	0.9594
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10033687 [exp]	15.4	0.9600

Compare expression of checked genes

Lus10013534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.