Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06620 347 / 3e-119 SDG38, ATXR4 SET domain protein 38 (.1) AT2G19640 61 / 4e-10 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT2G17900 57 / 8e-09 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT3G21820 49 / 3e-06 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT1G26760 44 / 0.0001 SDG35, ATXR1 SET domain protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026687 [exp] 56 / 2e-08 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10004628 [exp] 49 / 3e-06 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10029712 [exp] 47 / 1e-05 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10037155 [exp] 46 / 4e-05 AT1G26760 573 / 0.0 SET domain protein 35 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196566 [exp] 259 / 3e-87 AT5G06620 229 / 2e-75 SET domain protein 38 (.1) Potri.006G196632 [exp] 134 / 4e-39 AT5G06620 124 / 2e-35 SET domain protein 38 (.1) Potri.001G071700 [exp] 58 / 3e-09 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.005G173100 [exp] 51 / 6e-07 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.008G089500 [exp] 50 / 1e-06 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.017G038700 [exp] 48 / 6e-06 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10013535 pacid=23168731 polypeptide=Lus10013535 locus=Lus10013535.g ID=Lus10013535.BGIv1.0 annot-version=v1.0 ATGTCGCGCTTGGTTCGTTATTCCCGTACAATTCTCCCGCGCTTTCTAAACCCTGGTCATTCCATTGACCGGCGGCAACTTCTCGTCTTCAAATTTTCCA CCACTCCCTCCTCGGATGACGAGGAGTCTGCTGCTCGACGGCCGGATCCGCCTCCAATCCGAGTTTCTCTCACTGAGTTAGCTGGCCGAGGCGTGTTCGC CACTCGGAGGATCGGCGCCGGCGAGCTCATTCACACTGCCAAACCTGTTTTGTGCCACCCGACGCTCTCTTCCGTCAATTCCGTGTGTTACTTTTGTCTA AGGAAGCTCAGGTCAGATGGCCAAGGTCCTGGATTCTGTAGTCGAGAGTGCGAAGACAAGGCTAAGGCGTTTTATTATGTTGAGAAGAAAGCTGATTGGT CCGATTTCGATGCTTATTGTCGGTCCGAGGGTCTAAAGTATCCACAAATGGTGAAAAGGTTAGCTTGTCAGGTGATATCAGGAGCTGCATCTGCTGAAAG TCTCGACATACTTCAGCCTGCTTCTATTTCCGAAGAGCTGGAGTTGAGGATGGAGGAGGGATATGGCCTATTGAGAAGGTCCCTTTCTGCGGCAAACATT CCAGATAAGACGATGGCATTTTTATCCAGAGAATGGTATAATGGTGTGCTGGCACGAATTCGCATAAATGCATTCCGCATAGAATTGGCTCTTGGATCGT ATGAAGATCTTTTGGCATCTGCCGCTGCCTGTGTTGATGCTGAAGCTGCTGTTGGGAATGCTGTTTATATGCTTCCCTCCTTCTACAACCATGACTGCGA TCCCAACACACACATTATATGGATAGAGAACACAGATGCGAAATTGAAAGCCCTTCGTGATGTCGAGCCAGATGAAGAGCTACGAATCTGCTACATAGAT GCAAGTTTGGATCATACTGCTCGACAGACGGTGTTGCTCCAAGGTTTCGGATTTAAGTGCAGTTGCCCTCGTTGTCTGTCAGGGGACTAA
AA sequence Show only first row Show all	>Lus10013535 pacid=23168731 polypeptide=Lus10013535 locus=Lus10013535.g ID=Lus10013535.BGIv1.0 annot-version=v1.0 MSRLVRYSRTILPRFLNPGHSIDRRQLLVFKFSTTPSSDDEESAARRPDPPPIRVSLTELAGRGVFATRRIGAGELIHTAKPVLCHPTLSSVNSVCYFCL RKLRSDGQGPGFCSRECEDKAKAFYYVEKKADWSDFDAYCRSEGLKYPQMVKRLACQVISGAASAESLDILQPASISEELELRMEEGYGLLRRSLSAANI PDKTMAFLSREWYNGVLARIRINAFRIELALGSYEDLLASAAACVDAEAAVGNAVYMLPSFYNHDCDPNTHIIWIENTDAKLKALRDVEPDEELRICYID ASLDHTARQTVLLQGFGFKCSCPRCLSGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06620		SDG38, ATXR4	SET domain protein 38 (.1)		Lus10013535 [exp]	0	1
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	16.9	0.8335
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10014374 [exp]	17.1	0.8252
AT4G13720			Inosine triphosphate pyrophosp...		Lus10023678 [exp]	23.2	0.8051
AT5G66540			unknown protein		Lus10001234 [exp]	42.3	0.8013
AT3G15460			Ribosomal RNA processing Brix ...		Lus10019857 [exp]	63.9	0.7411
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10009437 [exp]	154.6	0.7239
AT3G22450			Ribosomal L18p/L5e family prot...		Lus10006115 [exp]	205.0	0.7329
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10005913 [exp]	207.3	0.7261

Compare expression of checked genes

Lus10013535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.